Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0245.Seq
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 1e-30
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 129 2e-30
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 124 5e-29
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 97 8e-21
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 62 2e-10
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 4e-04
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 31 0.44
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.59
SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3) 29 1.8
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 28 5.5
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_6045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 27 7.2
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015) 27 9.6
SB_56947| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 27 9.6
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 129 bits (312), Expect = 1e-30
Identities = 59/64 (92%), Positives = 61/64 (95%)
Frame = +2
Query: 65 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 244
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 245 MXPT 256
M PT
Sbjct: 61 MNPT 64
Score = 91.1 bits (216), Expect = 5e-19
Identities = 53/99 (53%), Positives = 60/99 (60%), Gaps = 25/99 (25%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAXKGEDITFFPEEV--- 420
P NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV KGE TFF EEV
Sbjct: 63 PTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNE 122
Query: 421 ----------------------XSMVLTKMKETXEAYLG 471
SMVL KMKET EAYLG
Sbjct: 123 AGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLG 161
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +1
Query: 415 EVXSMVLTKMKETXEAYLG 471
++ SMVL KMKET EAYLG
Sbjct: 211 QISSMVLNKMKETAEAYLG 229
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 129 bits (311), Expect = 2e-30
Identities = 60/63 (95%), Positives = 61/63 (96%)
Frame = +2
Query: 65 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 244
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
Query: 245 MXP 253
M P
Sbjct: 61 MNP 63
Score = 115 bits (277), Expect = 2e-26
Identities = 51/74 (68%), Positives = 59/74 (79%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAXKGEDITFFPEEVXSM 429
P NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V KGE +FFPEE+ SM
Sbjct: 63 PENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSM 122
Query: 430 VLTKMKETXEAYLG 471
VLTKMKET EAYLG
Sbjct: 123 VLTKMKETAEAYLG 136
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 124 bits (299), Expect = 5e-29
Identities = 56/63 (88%), Positives = 60/63 (95%)
Frame = +2
Query: 65 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 244
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
Query: 245 MXP 253
+ P
Sbjct: 61 LNP 63
Score = 114 bits (275), Expect = 4e-26
Identities = 54/89 (60%), Positives = 64/89 (71%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAXKGEDITFFPEEVXSM 429
P NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V KGE TF EE+ SM
Sbjct: 63 PENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSM 122
Query: 430 VLTKMKETXEAYLGKTXAECSYHXSRXFN 516
VL KMKET EAYLG+ FN
Sbjct: 123 VLGKMKETAEAYLGQKVTSAVITVPAYFN 151
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 97.1 bits (231), Expect = 8e-21
Identities = 45/58 (77%), Positives = 51/58 (87%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMXP 253
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+ P
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTTNP 761
Score = 96.7 bits (230), Expect = 1e-20
Identities = 47/89 (52%), Positives = 58/89 (65%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAXKGEDITFFPEEVXSM 429
P NT+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E TF EE+ +M
Sbjct: 761 PENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAM 820
Query: 430 VLTKMKETXEAYLGKTXAECSYHXSRXFN 516
VLTKMKET EAYLGK FN
Sbjct: 821 VLTKMKETAEAYLGKKVTHAVVTVPAYFN 849
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +2
Query: 71 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 244
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 245 MXP 253
+ P
Sbjct: 90 INP 92
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD-GGKPKIKVAXKGEDITFFPEEVXS 426
P NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 92 PKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGG 151
Query: 427 MVLTKMKETXEAYLGKT 477
V+ K++ E L T
Sbjct: 152 YVIKKLRTMAERNLTTT 168
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 58.4 bits (135), Expect = 3e-09
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 NTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAXKGEDITFFPEEVXSMV 432
NTI KR IGRKF D VQ ++ H P++VV I+V G+ F PE+V +M+
Sbjct: 121 NTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAML 180
Query: 433 LTKMKETXEAYLGKTXAEC 489
T++K T E L +C
Sbjct: 181 FTRLKTTAEIALKTKVTDC 199
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 238
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 134 GKVEIIANDQGNRTTPSYVAFTDTERLI 217
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 370 IKVAXKGEDITFFPEEVXSMVLTKMKETXEAYLGKTXAECSYHXSRXFN 516
I V GE +F PE++ ++VL ++K EA+LG+ FN
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFN 50
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 143 EIIANDQGNRTTPSYVAFT-DTERL 214
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_7560| Best HMM Match : Metallothio_PEC (HMM E-Value=1.3)
Length = 350
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 251 GSSPPGSWRHLR*DARCL*TQHKTEWSCCPGRW 153
GS PPG W R +AR T +T +SC PG W
Sbjct: 206 GSCPPGFWCRKRREARAA-TDLET-YSCPPGFW 236
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +1
Query: 52 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 228
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 229 QEPGGDXPHNTIFDA 273
G P NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 93 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 236
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 89
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 93 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRT 236
IW P+ L++S R+S + PLR L P VSS +P T
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPT 435
>SB_6045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 419 TSSG--KKVMSSPLXATLILGLPPSLTTSKGQCFMSACTVASSNLRPMRRLASNIV-LWG 249
TS G + +S+P A LGL PS +S Q +S+ L+P++ ++ ++G
Sbjct: 14 TSRGYTRSFVSNPYSALAGLGLNPSALSSSDQSALSSLYSGLLGLKPLQSNKMSLAQMYG 73
Query: 248 SSP 240
SP
Sbjct: 74 GSP 76
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = +2
Query: 104 TYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMXPTTQYSMPNVS 283
T++ + H I+ N G +TP + T A + + M PT V+
Sbjct: 559 THTTTSITLHPSSAILDNSLGPASTPRTTISSTTHVSSTPIASSSMVMTPTAINPSATVT 618
Query: 284 SDVSSKMLLCKP 319
+ V S ++ KP
Sbjct: 619 TTVPSTSVVVKP 630
>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
Length = 779
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +2
Query: 77 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMXPT 256
P G+DL G+FQ GK+++ + + +++A + +GDAAK ++ +
Sbjct: 547 PTGGLDLS------GMFQ-GKIQVASTAESEAGRKAFLAECERNPNLGDAAKMKLESCLS 599
Query: 257 TQYSMPNVSSDV 292
S N+ D+
Sbjct: 600 DLVSTANIFKDL 611
>SB_56947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 214 HRRCRQEPGGDXPHNTIFDAK 276
HRR ++P G PH+T D K
Sbjct: 267 HRRLEEDPVGRLPHSTYVDKK 287
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 173 TTPSYVAFTDTERLIGDAAKNQVAMXPTTQYSMPNVSSDVSSKMLLCK 316
TTP+ + TE GDA + T Q + P ++++ SK LLC+
Sbjct: 92 TTPAAEPLSCTEG-DGDATETLNPPQTTRQQNPPTITNETISKKLLCE 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,248
Number of Sequences: 59808
Number of extensions: 367426
Number of successful extensions: 1206
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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