Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0244.Seq
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   3.8  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   3.8  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    22   3.8  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   6.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.9  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 389 LFFFNILNELKTLMTKLN*IDDYLI 463
           + F+   N+LKTL++ L  I  Y I
Sbjct: 126 VMFYKRSNDLKTLLSNLESIQIYSI 150


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 199 NDSEGLKFYIRCVIIHSPLKIYTKI 273
           N +E  K +I C+  ++ +  YTKI
Sbjct: 220 NVAESRKIFIECIEQYNVILRYTKI 244


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 389 LFFFNILNELKTLMTKLN*IDDYLI 463
           + F+   N+LKTL++ L  I  Y I
Sbjct: 82  VMFYKRSNDLKTLLSNLESIQIYSI 106


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 80  FNELYGKVYLKRIIVLV 30
           FN +YG   L+ IIV++
Sbjct: 236 FNNIYGLAMLEIIIVVI 252


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 202 DSEGLKFYIRCVII 243
           +S+G +FYI C I+
Sbjct: 520 NSQGFRFYIACGIM 533


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = -3

Query: 232 IVYKILSLRNHFNLIFIGITLRKTIENLCC 143
           +++K   +RN  N+  + +++   +  L C
Sbjct: 92  VIFKTKDMRNSTNIFLVNLSVADLMVLLVC 121


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = -3

Query: 232 IVYKILSLRNHFNLIFIGITLRKTIENLCC 143
           +++K   +RN  N+  + +++   +  L C
Sbjct: 92  VIFKTKDMRNSTNIFLVNLSVADLMVLLVC 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,390
Number of Sequences: 336
Number of extensions: 2761
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)