Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0244.Seq
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   1.7  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    25   5.3  
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    25   9.2  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -3

Query: 136 KRSRFPPIYGNYS--FTKQLNSMNYMVRYI*SVSL 38
           + +  PP++ +     + +LNS+N +VRYI S+SL
Sbjct: 506 RSTHLPPLFASLMQHLSCRLNSLNNLVRYIRSMSL 540


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 262 YTKI*KMLDPIHLGFGALNTYGVNSFSI 345
           ++ +  +L  +HL F   NTYG  +FS+
Sbjct: 546 FSTLVSLLIRLHLDFHTNNTYGARAFSL 573


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 528 TVVELLD*LC*TENDFYLVFKNIK 457
           T+V +   LC  EN F L+ KNI+
Sbjct: 158 TIVAISSELCAVENQFNLLVKNIE 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,574
Number of Sequences: 5004
Number of extensions: 43593
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)