Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0244.Seq
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       27   7.2  
SB_29988| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 92   CEAIVTVDWWESGPFLNTTQIFN 160
            C + +  +WWE+ P++ T   FN
Sbjct: 1524 CHSAMYTNWWENPPYVETPGSFN 1546


>SB_29988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 92  CEAIVTVDWWESGPFLNTTQIFN 160
           C + +  +WWE+ P++ T   FN
Sbjct: 26  CHSAMYTNWWENPPYVETPGSFN 48


>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 92  CEAIVTVDWWESGPFLNTTQIFNG 163
           C   + VDWWE  P++   +  NG
Sbjct: 484 CPTTLNVDWWEIPPYIYQKKESNG 507


>SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 316 SEPQSQGESGQAFFKFLCIFLMDYV**RIVYKILSLRNHFNLIFI 182
           SE +  G S   FF  L   +M+++   +VY+   LR H + +FI
Sbjct: 34  SETEVFGFSLCLFFMTLAAVVMNFLVCLVVYRSKELRRHISSVFI 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,877,263
Number of Sequences: 59808
Number of extensions: 258207
Number of successful extensions: 323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)