Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0243.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   5.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   9.4  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 406 CFSSLHCIVKFT**FFFCSNLCYFVTXLCENINXSFTK 519
           CF+S   +  FT  FFF +  C F+  +  NI   F K
Sbjct: 63  CFNSY--MYAFTHIFFFFAICCDFIALIVVNIVHVFRK 98


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 126 LNLMILKLTSREITSNIPESLSRVTV 203
           ++ + L+  + E T+N PE  + VTV
Sbjct: 111 ISWIFLETVANENTTNCPEQKNTVTV 136


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
          protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 59 DDDLFPGFSDT 91
          D +LFPGF  T
Sbjct: 13 DSELFPGFGST 23


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 277 RRLFRHLSLANSAAAHCL 224
           R+ ++HL   NSA A  L
Sbjct: 80  RKAWKHLDFRNSATAELL 97


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 277 RRLFRHLSLANSAAAHCL 224
           R+ ++HL   NSA A  L
Sbjct: 80  RKAWKHLDFRNSATAELL 97


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -3

Query: 321 WIYLIAIFVFHDLFFDGFSVICH 253
           W++L+ IF+   ++      ICH
Sbjct: 629 WLHLLYIFLVGIMYAADVFYICH 651


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,585
Number of Sequences: 336
Number of extensions: 2228
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)