Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0243.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.6  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   7.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 541 LIFFTSKTL*MKXLYFRTXQSQNNTNLNKKRTIT 440
           +I  T KTL +  ++F   Q++   N NKKR ++
Sbjct: 1   MISKTIKTLIITKIFFSFKQTKRKKNKNKKRILS 34


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 77  GFSDTFKMPEIPEIKSLEFDDIKTHVA 157
           GFSD  ++ E P    + +DDI +H A
Sbjct: 919 GFSDINEIKEHPFFNGINWDDIFSHEA 945


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 44   FVWEDDDDLFPGFSD--TFKMPEIPEIKSLEFDDIKTHV--AGDNEQYTGE 184
            F WED+D+   G+ D   +   E+ E  S  F+ ++       DN+ +  E
Sbjct: 1943 FEWEDEDNASSGYEDELDYNEDEVGENDSTTFEAMENAFTETSDNDDHLEE 1993


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,815
Number of Sequences: 5004
Number of extensions: 35063
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)