Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0243.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0610 + 24335153-24337724,24337835-24338256 30 1.4
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 29 2.4
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 29 3.2
06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980 28 5.6
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 27 7.5
05_07_0133 - 27908427-27908555,27908705-27908827,27908915-279090... 27 9.9
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041... 27 9.9
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459 27 9.9
01_06_0390 - 28938485-28938751,28939924-28941282 27 9.9
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 120 SLLNLMILKLTSREITSNIPESLSR 194
+L L+ LKLTS ++T NIP +L R
Sbjct: 481 NLRQLVYLKLTSNKLTGNIPNALDR 505
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 47 VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDD 139
+W+ DDD FP F+ IP+ S +FDD
Sbjct: 1072 IWDSDDD-FPNEEKHFRTQIIPKDLSQDFDD 1101
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 53 EDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQYTG 181
E + D P +T PE PE S++ + K + A DNE+Y G
Sbjct: 413 EVEQDQMPPVQETLHNPE-PE--SIDIEPPKENTADDNERYVG 452
>06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980
Length = 208
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 283 FLRRLFRHLSLANSAAAHCLAVDRG 209
FLR LFR ++NS A A+DRG
Sbjct: 114 FLRALFRRDRISNSGAVGLCAMDRG 138
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 47 VWEDDDDLFPGFSDTFKMPEIPEIKSLEFDDIKTHVAGDNEQY 175
VW+DD L G+ + K+ I S + I+ + NE+Y
Sbjct: 245 VWQDDTILVIGWGTSVKIAAIRTDSSQGLNGIQRSITASNEKY 287
>05_07_0133 -
27908427-27908555,27908705-27908827,27908915-27909022,
27909109-27909198,27909304-27909363,27909454-27909516,
27909604-27909678,27910337-27910402,27910607-27910786
Length = 297
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 138 ILKLTSREITSNIPESLSRVTVPHPRSTARQ*AAAELASD 257
ILKLT +E +P+ VTVPH S Q AEL +
Sbjct: 149 ILKLT-KETREMLPDITLSVTVPHTLSLLDQVRLAELLEE 187
>02_04_0458 -
23102262-23102377,23102505-23102661,23103094-23104140,
23104357-23104500,23105389-23105457
Length = 510
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 183 SPVYCSLSPAT*VLISSNSRDFISGISGILNVSENPGN 70
+P +C PA+ V + S+ FIS + ILN + P +
Sbjct: 33 NPQFCHTQPASFVTVISDRTTFISIFAKILNSAIQPAS 70
>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
Length = 867
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +3
Query: 120 SLLNLMILKLTSREITSNIPESLSRVT 200
+L +L+ L L++ EIT +IPES+ +T
Sbjct: 300 NLRSLIKLYLSTNEITGSIPESIGNLT 326
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 17 TLITIASAGFVWEDDDDLFP-----GFSDTFKMPEIPEIKSLE 130
T+I +A+ W D DD+F G++D +PEIPE S E
Sbjct: 192 TIIEMATGRVPWSDMDDVFSAVHRIGYTDA--VPEIPEWLSPE 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,590,692
Number of Sequences: 37544
Number of extensions: 194821
Number of successful extensions: 509
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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