Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0243.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical
           protein T17A3.7 protein.
          Length = 290

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 136 IKFKRLYLWYLWHLERI*KSREQIVI 59
           +KF+RL++W   HL+R+    E +++
Sbjct: 153 LKFRRLHIWANCHLQRVPMKLEDLLV 178


>Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical
           protein C29F3.6 protein.
          Length = 278

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 372 FCEIIFLT*IFLFVNNRWIYLIAIFVFHDL 283
           FC + FL  +FLF  N +I+   + VFHD+
Sbjct: 65  FCFMDFLD-VFLFQENVFIFGFLVAVFHDV 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,626,618
Number of Sequences: 27780
Number of extensions: 190761
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)