Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0242.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   1.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   4.7  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   4.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.2  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 465 PRPDLADY*PPGPALPP 415
           P P + D   PGPALPP
Sbjct: 153 PNPSIID---PGPALPP 166


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 465 PRPDLADY*PPGPALPP 415
           P P + D   PGPALPP
Sbjct: 153 PNPSIID---PGPALPP 166


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 153 AVLWLGGAGPLVVIKKTFVHTVSNLVFS 70
           A+L   GAG   ++     HT SNL  S
Sbjct: 108 AILGSSGAGKTTLLNTLTFHTSSNLTVS 135


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 153 AVLWLGGAGPLVVIKKTFVHTVSNLVFS 70
           A+L   GAG   ++     HT SNL  S
Sbjct: 108 AILGSSGAGKTTLLNTLTFHTSSNLTVS 135


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 291 SEHWLSEYCLVWEATSRGFSSRFRIPKLLHE 383
           +E +  EY LVW      +  R  +   LHE
Sbjct: 187 NEDYSCEYNLVWIKEESIYEERISVVSGLHE 217


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 324 WEATSRGFSSRFRIPKLLHEI 386
           W ATSR F++ +  P +  EI
Sbjct: 313 WSATSRVFATFYNKPLIHKEI 333


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 315 CLVWEATSRGFSSRFRIPKL 374
           C VW+     +  RFR+ K+
Sbjct: 229 CGVWKRIPHDYRKRFRMEKI 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,480
Number of Sequences: 336
Number of extensions: 2635
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)