Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0242.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   4.8  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   4.8  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   4.8  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    25   6.3  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.3  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    25   8.4  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   8.4  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 369 WEYEIARRIRARSPPTQGSTPTASVLKSLVYLN 271
           W+   AR+I    P T G+       K++ YLN
Sbjct: 625 WDVTDARKIWCFGPDTTGANVVVDQTKAVAYLN 657


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 369 WEYEIARRIRARSPPTQGSTPTASVLKSLVYLN 271
           W+   AR+I    P T G+       K++ YLN
Sbjct: 625 WDVTDARKIWCFGPDTTGANVVVDQTKAVAYLN 657


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 388 PISCSNL--GIRNREENPREVASHTRQYSD 305
           P+S SN    I       R +ASH++Q+SD
Sbjct: 308 PVSISNTPENIHPSSSEVRRIASHSKQFSD 337


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 133 PTQPQHSTLRRAGHVCTPSLYSIK----KVRCRHD*VIREQKALK 255
           PT    ST++RAGH  TP     K    K+   H  ++R+  ++K
Sbjct: 240 PTSVDPSTVKRAGHNQTPKQKKPKTRRGKITNTHLNILRDYSSMK 284


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 140 SHSTARCAGRVTC-ARRHFTVLKKSVVVMTK*SGNKRH*N 256
           SHS  R    VT  +  HF  L+ ++  ++K S NK H N
Sbjct: 141 SHSAPRSLEGVTSLSDSHFNSLEANLKAISKDSNNKAHNN 180


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -1

Query: 169 PPGAACCAVAGWGRAACCY*ENFCT-YCIKSC 77
           PP   C     WG+ AC   +N  T YC K C
Sbjct: 97  PPRKFCNVCGYWGKYAC---QNCGTSYCSKGC 125


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 118 NKRPCPTQPQHSTLRRA 168
           N +PC   P H+ LRR+
Sbjct: 253 NSQPCEQHPAHANLRRS 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,934
Number of Sequences: 5004
Number of extensions: 41085
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)