Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0242.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0775 - 7531397-7531564,7531590-7532771 29 2.1
07_01_1188 + 11284274-11284480 29 2.1
05_01_0517 + 4403644-4403796,4404025-4404307,4404324-4404749,440... 29 2.7
09_04_0583 - 18699265-18699459,18701579-18701827,18703283-187036... 28 3.6
06_01_0725 + 5305839-5306279,5306816-5307028,5307229-5307675,530... 28 4.8
04_01_0103 + 1082077-1082167,1083037-1085477 28 4.8
02_04_0017 + 18937774-18937864,18938505-18940945 28 4.8
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 24 5.8
05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570 27 6.3
01_06_0662 + 30987187-30987277,30987825-30990214 27 6.3
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 27 6.3
09_04_0416 - 17399059-17399777,17400560-17400704 27 8.4
06_02_0335 - 14591512-14591772,14594021-14594215,14594379-145946... 27 8.4
>08_01_0775 - 7531397-7531564,7531590-7532771
Length = 449
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 109 LNNNKRPCPTQPQHSTLRRAGHVCTPSLYSIKKV 210
+ K C T+ +H TLR VC P +K++
Sbjct: 332 MKQGKAACFTEDEHGTLRNENRVCVPDDRELKQL 365
>07_01_1188 + 11284274-11284480
Length = 68
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Frame = -1
Query: 214 NGLF*YCKVTACTRDP---PGAACCAVAGWGRAAC 119
NG F C+ A DP P A CCA G AC
Sbjct: 31 NGDFKLCQPAAAVSDPTDGPSAECCAALGEADLAC 65
>05_01_0517 +
4403644-4403796,4404025-4404307,4404324-4404749,
4404789-4405372,4417315-4417479,4417629-4417694
Length = 558
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 88 YSMYKSFLNNNKRPCPTQPQHSTLRRAGHVCTPSLYSIKK 207
Y+ Y + NNKRP PT + + HV L KK
Sbjct: 362 YARYLKDILNNKRPLPTTEVVKLIEQCSHVILHKLLEKKK 401
>09_04_0583 -
18699265-18699459,18701579-18701827,18703283-18703669,
18703793-18703870,18704082-18704141,18704299-18704343,
18704506-18704718,18704867-18704932
Length = 430
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 165 PAQRAVLWLGGAGPLVVIK 109
PA+R LWLGG P VIK
Sbjct: 265 PAERCFLWLGGFRPSEVIK 283
>06_01_0725 +
5305839-5306279,5306816-5307028,5307229-5307675,
5307768-5307917,5308185-5308486,5309718-5309758,
5311294-5311968,5312343-5312386
Length = 770
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 467 HHDQTSPTTDRPARR 423
HHD TS TT++P RR
Sbjct: 696 HHDATSATTEKPLRR 710
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 393 KILFHVVIWEYEIARRIRARSPPTQGSTPTASVLKSLVYLN 271
KIL W+ ++A++I P T G + K + YLN
Sbjct: 618 KILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 393 KILFHVVIWEYEIARRIRARSPPTQGSTPTASVLKSLVYLN 271
KIL W+ ++A++I P T G + K + YLN
Sbjct: 618 KILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 24.2 bits (50), Expect(2) = 5.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 477 AAATPRPDLADY*PPGPALPPHR 409
A+A PR L PP PA+ PHR
Sbjct: 2 ASAAPRSRLT---PPTPAMHPHR 21
Score = 21.8 bits (44), Expect(2) = 5.8
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 348 RIRARSPPTQGS 313
R RARSPP GS
Sbjct: 21 RKRARSPPASGS 32
>05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570
Length = 378
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 488 GTTXQPRHHDQTSPTTDRPARRCPR 414
G+ PRH D + TT P +R PR
Sbjct: 219 GSPPPPRHTDTATVTTPPPTKRSPR 243
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 393 KILFHVVIWEYEIARRIRARSPPTQGSTPTASVLKSLVYLN 271
KIL W+ ++A++I P T G + K + YLN
Sbjct: 614 KILSEEFGWDKDLAKKIWCFGPETTGPNIVVDMCKGVQYLN 654
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 393 KILFHVVIWEYEIARRIRARSPPTQGSTPTASVLKSLVYLN 271
KIL W+ ++A++I A P T+G + K + YL+
Sbjct: 628 KILSEEFGWDKDLAKKIWAFGPETKGPNLLVDMCKGVQYLS 668
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 128 PAPPSHSTARCAGRVTC 178
P+PP H +ARC R +C
Sbjct: 235 PSPPRHRSARCRRRSSC 251
>06_02_0335 -
14591512-14591772,14594021-14594215,14594379-14594679,
14594930-14595051,14595287-14595466,14595514-14596337,
14596377-14596435,14596480-14597075
Length = 845
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 88 YSMYKSFLNNNKRPCPTQPQHSTLRRAGHVCTPSLYSIKK 207
Y+ Y + NNKRP PT + ++ P L KK
Sbjct: 293 YARYLKDILNNKRPLPTTEVVKLTEHSSNIILPKLPEKKK 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,207,564
Number of Sequences: 37544
Number of extensions: 324652
Number of successful extensions: 1093
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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