Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0242.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45594| Best HMM Match : EB1 (HMM E-Value=3.1)                       29   2.8  
SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)                  28   3.7  
SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)            28   3.7  
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.7  
SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34)                  27   6.5  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     27   8.6  
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 27   8.6  
SB_23764| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     27   8.6  
SB_11349| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)                  27   8.6  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    23   9.0  

>SB_45594| Best HMM Match : EB1 (HMM E-Value=3.1)
          Length = 264

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 471 ATP-RPDLADY*PPGPALPPHRMGLGLKILFHVVIWEYEIARRIRARSPPTQGSTPTASV 295
           ATP +P  A Y   GP  PP   G    +   + I E  + R +  RS  T   T +A +
Sbjct: 129 ATPVKP--APYKGKGPWEPPSHKGKIASVNEGIEIGELPVTRAVYNRSSETSDETASAEM 186

Query: 294 LKSLVY 277
            +S +Y
Sbjct: 187 YQSAMY 192


>SB_51594| Best HMM Match : p450 (HMM E-Value=3.5e-35)
          Length = 1208

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
 Frame = +1

Query: 112 NNNKRPCPTQPQ---HSTLRR-AGHVC-TPSLYSIKKVR---CRHD*VIREQKALKLLSS 267
           N++ +P P  P+    S  R  AG+ C T +  S +++R    R   + +  KAL+ +S 
Sbjct: 83  NSSPKPSPKTPRTRKSSNGRNLAGNSCPTSTSRSSERLRQKASREFKLPQRDKALESISP 142

Query: 268 GV*VNQALQNTGCRSTALCGRR-----PRADSPRDFV 363
           GV  N  L+   C+S   C  R     P  DS  DF+
Sbjct: 143 GVLRNVELEEERCKSLRPCRLRAADCYPSGDSLSDFI 179


>SB_9653| Best HMM Match : Retrotrans_gag (HMM E-Value=0.05)
          Length = 626

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 453 LADY*P-PGPALPPHRMGLGLKILFHV-VIWEYEIARRIRARSPPTQ 319
           +A Y P P P+ PPHR G        + +I + E+ + +R  +PP Q
Sbjct: 290 IAAYEPTPDPSRPPHRPGADNLTRDDIRLIIQQELRKELRRSNPPNQ 336


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 51  TGLILCYSKFCNFC 10
           TGL+LC  KFCN C
Sbjct: 375 TGLLLCSHKFCNSC 388


>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 184 ACTRDPPGAACCAVAGWGRAACCY*ENFCTYC 89
           +CT   P  A C   GWGR  C + E+    C
Sbjct: 460 SCTGYEPSLASCNFPGWGRHNCRHSEDAGVVC 491


>SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34)
          Length = 560

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 181 CTRDPPGAACCAVAGWGRAACCY*ENFCTYCI 86
           C+      A CA +GWGR  C + E+    C+
Sbjct: 233 CSGSESSLASCAFSGWGRHNCHHGEDAGVTCM 264


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 169 PPGAACCAVAGWGRAA 122
           PP  A C V GWGR A
Sbjct: 376 PPDGAGCYVTGWGRTA 391


>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 95   CTKVFLITTSGPAPPSHSTARCAGRVTCARRHFT 196
            C + F ++T  P PP  ST RC     C R   T
Sbjct: 1485 CIRGF-VSTDPPPPPLRSTVRCLTWTDCPRTSTT 1517


>SB_23764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 438 PPGPALPPHRMGLGLKILFHVV 373
           PPGP LPP   G G K   +VV
Sbjct: 9   PPGPPLPPRGQGTGSKGYENVV 30


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 169 PPGAACCAVAGWGRAA 122
           PP  A C V GWGR A
Sbjct: 661 PPDGAGCYVTGWGRTA 676


>SB_11349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 132 PHPATAQHAAPGGSRVHAVTLQY*KSPLSS*LSNQGTKG 248
           P PA  +   PG      + L Y  SPL   L NQG +G
Sbjct: 284 PKPAWIKQKNPGYGPDVVLELTYSSSPLGLILGNQGRRG 322


>SB_9494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 670

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 453 LADY*P-PGPALPPHRMGLGLKILFHV-VIWEYEIARRIRARSPPTQ 319
           +A Y P P P+ PPHR G        +  I + E+ + +R  +PP Q
Sbjct: 170 IAAYEPTPDPSRPPHRPGADNLTRDDIRQIIQQELRKELRRSNPPNQ 216


>SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
          Length = 476

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 249 CLLFPDYLVMTTTDFFNTVK 190
           C  FPDYL++T+ + +N+++
Sbjct: 4   CTTFPDYLLVTSREAYNSLR 23


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 22.6 bits (46), Expect(2) = 9.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 465 PRPDLADY*PPGPALPP 415
           P  +L D  PPGP  PP
Sbjct: 102 PPGELGDMGPPGPPGPP 118



 Score = 22.6 bits (46), Expect(2) = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 438 PPGPALPPHRMGL 400
           PPGP +PP   GL
Sbjct: 117 PPGPQMPPGPPGL 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,015,279
Number of Sequences: 59808
Number of extensions: 344798
Number of successful extensions: 1002
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)