Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0242.Seq
         (499 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dp...    24   3.3  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    24   3.3  
AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.           23   5.8  
AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.     23   5.8  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   5.8  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   5.8  
AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding pr...    23   7.6  
AJ697720-1|CAG26913.1|  207|Anopheles gambiae putative odorant-b...    23   7.6  

>AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dpp
           protein.
          Length = 474

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 56  VFYKILNTRFDTV--CTKVFLITTSGPAPPSHSTARCAGRVTCARRHFTV 199
           + Y  LN R   V  CT   +I      P ++S   C G+++   R+ T+
Sbjct: 283 IAYYELNCRVGEVFHCTNTSIIVDGFTNPSNNSDRFCLGQLSNVNRNSTI 332


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 178 CTPSLYSIKKVRC--RHD*VIREQKALKL 258
           CT  LY ++K RC  +H+ +  +  ALK+
Sbjct: 52  CTDELYDMRKSRCMTKHELLESKCNALKI 80


>AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.
          Length = 259

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 106 FLNNNKRPCPTQPQHSTLRRAGHVCTPSLYSIKKVRCR 219
           F  NNK        H     AG+V  P L +   +RC+
Sbjct: 158 FCFNNKADREVYESHRCKDEAGNVTCPVLQTFVCMRCK 195


>AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.
          Length = 260

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 106 FLNNNKRPCPTQPQHSTLRRAGHVCTPSLYSIKKVRCR 219
           F  NNK        H     AG+V  P L +   +RC+
Sbjct: 159 FCFNNKADREVYESHRCKDEAGNVTCPVLQTFVCMRCK 196


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 199 YCKVTACTRDPPGAACCAVAGWGRAAC 119
           YC+    + D PG   C+    GR  C
Sbjct: 587 YCECDNFSCDRPGGLLCSGPDHGRCVC 613


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 423 LPPHRMGLGLKILFH 379
           LPPHR  +G K +F+
Sbjct: 741 LPPHRKAIGSKWIFN 755


>AY146734-1|AAO12094.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP24 protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 88  YSMYKSFLNNNKRP 129
           Y MYK F +N+K P
Sbjct: 146 YQMYKCFFSNHKVP 159


>AJ697720-1|CAG26913.1|  207|Anopheles gambiae putative
           odorant-binding protein OBPjj10 protein.
          Length = 207

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 88  YSMYKSFLNNNKRP 129
           Y MYK F +N+K P
Sbjct: 177 YQMYKCFFSNHKVP 190


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,508
Number of Sequences: 2352
Number of extensions: 11018
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)