Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0242.Seq
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC026087-1|AAH26087.1| 275|Homo sapiens IBR domain containing 1... 33 0.55
AL136128-2|CAI22999.1| 275|Homo sapiens protein ( gene encodin... 33 0.55
AL136128-1|CAC36346.1| 202|Homo sapiens protein ( Human DNA seq... 33 0.55
AF525398-1|AAO14994.1| 1265|Homo sapiens codanin I protein. 29 6.8
Z25470-1|CAA80962.1| 325|Homo sapiens melanocortin receptor pro... 29 9.0
U08353-1|AAB60376.1| 325|Homo sapiens melanocortin-5 receptor p... 29 9.0
L27080-1|AAA59566.1| 325|Homo sapiens melanocortin 5 receptor p... 29 9.0
BC095531-1|AAH95531.1| 325|Homo sapiens melanocortin 5 receptor... 29 9.0
BC069545-1|AAH69545.1| 325|Homo sapiens melanocortin 5 receptor... 29 9.0
BC069153-1|AAH69153.1| 325|Homo sapiens melanocortin 5 receptor... 29 9.0
AY268429-1|AAP23196.1| 325|Homo sapiens melanocortin 5 receptor... 29 9.0
>BC026087-1|AAH26087.1| 275|Homo sapiens IBR domain containing 1
protein.
Length = 275
Score = 33.1 bits (72), Expect = 0.55
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 73 KYKI*YSMYKSFLNNNKRPCPTQPQHSTLRRAGHVCTPSLYSIK-KVRC 216
KYK Y + ++++ +PCP +T ++ GH+ TPS K K++C
Sbjct: 37 KYK--YFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQC 83
>AL136128-2|CAI22999.1| 275|Homo sapiens protein ( gene encoding
two variants of ).).
Length = 275
Score = 33.1 bits (72), Expect = 0.55
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 73 KYKI*YSMYKSFLNNNKRPCPTQPQHSTLRRAGHVCTPSLYSIK-KVRC 216
KYK Y + ++++ +PCP +T ++ GH+ TPS K K++C
Sbjct: 37 KYK--YFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQC 83
>AL136128-1|CAC36346.1| 202|Homo sapiens protein ( Human DNA
sequence from clone RP1-84N20 on chromosome 6 Contains a
novel gene, the 5' end of the TPD52L1 gene encoding two
variants of ).
Length = 202
Score = 33.1 bits (72), Expect = 0.55
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 73 KYKI*YSMYKSFLNNNKRPCPTQPQHSTLRRAGHVCTPSLYSIK-KVRC 216
KYK Y + ++++ +PCP +T ++ GH+ TPS K K++C
Sbjct: 37 KYK--YFLELGRIDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKYKIQC 83
>AF525398-1|AAO14994.1| 1265|Homo sapiens codanin I protein.
Length = 1265
Score = 29.5 bits (63), Expect = 6.8
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 465 PRPDLADY*PPGPALPPHRMGLGL-KILFHVVIWEYEIARRIRARSPPTQGSTPTA 301
PRP LA P PA P G+ +L ++ E +A +R + TQGS TA
Sbjct: 17 PRPSLAARGAPAPAQSPQSAPTGMAAVLESLLREEVSVAAVVRWIARSTQGSEVTA 72
>Z25470-1|CAA80962.1| 325|Homo sapiens melanocortin receptor
protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 406 HAVRGQRRAGRSVVGEVWSWCRGCXVV 486
H + RR+G + G +W++C GC +V
Sbjct: 151 HHIMTARRSGAIIAG-IWAFCTGCGIV 176
>U08353-1|AAB60376.1| 325|Homo sapiens melanocortin-5 receptor
protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 406 HAVRGQRRAGRSVVGEVWSWCRGCXVV 486
H + RR+G + G +W++C GC +V
Sbjct: 151 HHIMTARRSGAIIAG-IWAFCTGCGIV 176
>L27080-1|AAA59566.1| 325|Homo sapiens melanocortin 5 receptor
protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 406 HAVRGQRRAGRSVVGEVWSWCRGCXVV 486
H + RR+G + G +W++C GC +V
Sbjct: 151 HHIMTARRSGAIIAG-IWAFCTGCGIV 176
>BC095531-1|AAH95531.1| 325|Homo sapiens melanocortin 5 receptor
protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 406 HAVRGQRRAGRSVVGEVWSWCRGCXVV 486
H + RR+G + G +W++C GC +V
Sbjct: 151 HHIMTARRSGAIIAG-IWAFCTGCGIV 176
>BC069545-1|AAH69545.1| 325|Homo sapiens melanocortin 5 receptor
protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 406 HAVRGQRRAGRSVVGEVWSWCRGCXVV 486
H + RR+G + G +W++C GC +V
Sbjct: 151 HHIMTARRSGAIIAG-IWAFCTGCGIV 176
>BC069153-1|AAH69153.1| 325|Homo sapiens melanocortin 5 receptor
protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 406 HAVRGQRRAGRSVVGEVWSWCRGCXVV 486
H + RR+G + G +W++C GC +V
Sbjct: 151 HHIMTARRSGAIIAG-IWAFCTGCGIV 176
>AY268429-1|AAP23196.1| 325|Homo sapiens melanocortin 5 receptor
protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 406 HAVRGQRRAGRSVVGEVWSWCRGCXVV 486
H + RR+G + G +W++C GC +V
Sbjct: 151 HHIMTARRSGAIIAG-IWAFCTGCGIV 176
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,513,000
Number of Sequences: 237096
Number of extensions: 1724339
Number of successful extensions: 4751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4740
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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