Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0242.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      28   3.3  
AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.      28   3.3  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    28   3.3  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    28   3.3  
Z82085-2|CAB04982.1|  247|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 373 NLGIRNRE--ENPREVASHTRQYSDSQCSEEPGLLKLHYLKVL 251
           N G +  E  E+P E++    +YS S+CS  P  +++ Y + L
Sbjct: 42  NYGYQTLEFTESPEEISVDFDKYSQSECSRFPSNVEIEYPECL 84


>AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 373 NLGIRNRE--ENPREVASHTRQYSDSQCSEEPGLLKLHYLKVL 251
           N G +  E  E+P E++    +YS S+CS  P  +++ Y + L
Sbjct: 34  NYGYQTLEFTESPEEISVDFDKYSQSECSRFPSNVEIEYPECL 76


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 373 NLGIRNRE--ENPREVASHTRQYSDSQCSEEPGLLKLHYLKVL 251
           N G +  E  E+P E++    +YS S+CS  P  +++ Y + L
Sbjct: 42  NYGYQTLEFTESPEEISVDFDKYSQSECSRFPSNVEIEYPECL 84


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 373 NLGIRNRE--ENPREVASHTRQYSDSQCSEEPGLLKLHYLKVL 251
           N G +  E  E+P E++    +YS S+CS  P  +++ Y + L
Sbjct: 42  NYGYQTLEFTESPEEISVDFDKYSQSECSRFPSNVEIEYPECL 84


>Z82085-2|CAB04982.1|  247|Caenorhabditis elegans Hypothetical
           protein ZK218.3 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 71  LNTRFDTVCTKVFLITTSGPAP-PSHSTAR 157
           +N   D+ C  ++ ITT  PAP P  ST R
Sbjct: 50  VNAYADSTCASLYAITTDEPAPVPGTSTPR 79


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 181  CTRDPPGAACCAVAGWGRAACCY*ENFCTYCIKSCI*Y 68
            C  D PG +CC  AG+    C   E +C  C K C+ Y
Sbjct: 1370 CDPDDPGFSCCGAAGY----CGSEEEYCE-C-KGCVNY 1401


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 467 HHDQTSPTTDRPARRCP 417
           HHD++SP    PA R P
Sbjct: 664 HHDRSSPVASEPAARSP 680


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,318
Number of Sequences: 27780
Number of extensions: 255275
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)