Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0242.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.4  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 411 RMGLGLKILFHVVIWEYEI 355
           ++  G  ILF V+IW Y I
Sbjct: 156 KLSRGQVILFIVLIWTYTI 174


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 352 EENPREVASHTRQYSDSQCS 293
           E NPR      R+ + S CS
Sbjct: 323 ERNPRSAVLAAREITSSSCS 342


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 485  TTXQPRHHDQTSPTTDRPARRCP 417
            +T  PR H         P RRCP
Sbjct: 1680 STWDPRRHMYEELNHCAPNRRCP 1702


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 452 SPTTDRPARRCPRTA 408
           SP++   A +CP+TA
Sbjct: 682 SPSSQAQASQCPQTA 696


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,298
Number of Sequences: 438
Number of extensions: 2944
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)