Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0242.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p...    30   0.75 
At5g57370.1 68418.m07168 expressed protein low similarity to nuc...    28   4.0  
At5g06839.1 68418.m00773 bZIP family transcription factor contai...    28   4.0  
At5g27160.1 68418.m03241 hypothetical protein contains Pfam prof...    27   5.3  
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof...    27   5.3  

>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
           putative similar to ELONGATION FACTOR 2 GB:O14460 from
           [Schizosaccharomyces pombe]
          Length = 843

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -2

Query: 489 RNYXAAATPRPDLADY*PPGPALPPHRMGLGLKILFHVVIWEYEIARRIRARSPPTQGST 310
           R Y  A      LA+    G   P     +  KIL     W+ ++A++I A  P T G  
Sbjct: 586 RLYMEARPMEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWAFGPETTGPN 645

Query: 309 PTASVLKSLVYLN 271
               + K + YLN
Sbjct: 646 MVVDMCKGVQYLN 658


>At5g57370.1 68418.m07168 expressed protein low similarity to
           nucleic acid binding protein [Homo sapiens] GI:431953
          Length = 219

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 470 RHHDQTSPTTDRPARRCPR 414
           RHH + SP+ D P+R+ PR
Sbjct: 90  RHHRRRSPSPDAPSRKRPR 108


>At5g06839.1 68418.m00773 bZIP family transcription factor contains
           Pfam profile: PF00170 bZIP transcription factor
          Length = 417

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -2

Query: 249 CLLFPDYLV-----MTTTDFFNTVK*RRAHVTRPAQRAVLWLGGAGPLVVIK 109
           CL   D+L+     +  TD F+ +    A  T PA+R  LW+GG  P  +IK
Sbjct: 234 CLAHYDHLINLKAMVAKTDVFHLIS--GAWKT-PAERCFLWMGGFRPSEIIK 282


>At5g27160.1 68418.m03241 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 702

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 364 IRNREENPREVASHTRQYSDSQCSEEP 284
           IR  + N  EVA+   ++ D  C +EP
Sbjct: 22  IREADMNREEVAAEENKFEDENCEQEP 48


>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 734

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 364 IRNREENPREVASHTRQYSDSQCSEEP 284
           IR  + N  EVA+   ++ D  C +EP
Sbjct: 22  IREADMNREEVAAEENKFEDENCEQEP 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,855,277
Number of Sequences: 28952
Number of extensions: 235274
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)