Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0241.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    27   2.7  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   4.8  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    26   4.8  

>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 89  CNNSIKITNYYRNRPELNKIIYIFNNK 169
           C  S++ TN+ ++RPEL     I N K
Sbjct: 15  CKFSMRFTNFLKSRPELKTKPAILNGK 41


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 136 LRSISVIIRYFYTIITSRLSLLNVESAGPCNFC 38
           +R +    RYF +    RLSL +VE +  C  C
Sbjct: 72  IRDVQHTSRYFRSSPKIRLSLRHVEKSWACKIC 104


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 488 CYKFTGFCVCLNLGAFSYIYNSXIIIRMNTKIFNI 592
           CY   GF    N    S +YNS  +I    ++ N+
Sbjct: 84  CYTIIGFPEFQNSNGISTLYNSTALISPKKELLNV 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,345
Number of Sequences: 5004
Number of extensions: 40485
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)