Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0241.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81493-2|CAB04040.1|  133|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine re...    27   7.7  

>Z81493-2|CAB04040.1|  133|Caenorhabditis elegans Hypothetical
           protein F01D5.2 protein.
          Length = 133

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 407 HIKLYKAXGICRLFFLNCSSKR*LLLNCYKFTGFC---VCLN 523
           H K +   G C   FL+C+ K   + NC K  GFC    CLN
Sbjct: 81  HCKSWAKQGYCTSCFLDCAEK---IQNCAKSCGFCNPEACLN 119


>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 452 LNCSSKR*LLLNCYKFTGFCVCLNLGAFSYIYNSXIIIRMNTKIF 586
           +NCS      +   KF GFC+ L  GA  ++    I++    K+F
Sbjct: 7   INCSKSYDDFVEASKFVGFCLYLIPGAILHVLILRILLIKQRKVF 51


>AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 69 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 158 IYKLFYLT-PVYFCNNSLFLYYYYIKV-KFT*CRVRWPL*F 42
           +Y +F++  PV+F   SL  +  YI + KFT  ++ WP+ F
Sbjct: 4   LYYVFHIYWPVFFVTCSLLYFTMYILIYKFT-TKILWPMRF 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,958,048
Number of Sequences: 27780
Number of extensions: 221928
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)