Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0241.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At4g31590.1 68417.m04487 glycosyl transferase family 2 protein s...    27   9.5  

>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 149  IYIFNNKIPTSQIVVSFRRLNQFTKLKK 232
            +Y FNN + T Q + +  R+ Q +KL+K
Sbjct: 1447 LYCFNNSVFTQQDMYAISRIGQASKLEK 1474


>At4g31590.1 68417.m04487 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 692

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 410 IKLYKAXGICRLFFLNCSSKR*LLLNCYKFTGFCVCLNLGAF 535
           I ++K   +  LFFL     R L+L  Y FT FC+ L L  F
Sbjct: 479 IAIWKKANLILLFFL----LRKLILPFYSFTLFCIILPLTMF 516


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,698,860
Number of Sequences: 28952
Number of extensions: 184041
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)