Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0239.Seq
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    88   5e-19
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.68 
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   0.90 
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   4.8  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   6.3  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    24   8.4  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 88.2 bits (209), Expect = 5e-19
 Identities = 41/68 (60%), Positives = 52/68 (76%)
 Frame = +2

Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDN 391
           K +   E  L    IKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTR KA V IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 392 XGHIGLGV 415
            GH+GLG+
Sbjct: 107 DGHVGLGI 114



 Score = 58.4 bits (135), Expect = 4e-10
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +3

Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLP K
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 0.68
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 150 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 25
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 191 RPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLGPSLNDE 307
           R    +++NR+T +  LV  T+      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 307 LIIQGRAEEEINDLEFFDGKENK*MLSSL 221
           LI++    EEI+D +F D   N  +++SL
Sbjct: 856 LILKSLGVEEISDFDFMDRPPNDTLMASL 884


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 261 NSRSLISSSARP*MMRF*RSCLXRNKHVPDSAHVXRH 371
           +SR+ I S+     +++  S   R KH+P+   + RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 216 IDKLESIYLFSLPSKNSRSLISSSA 290
           +D+L ++  + +PS+  RS++S  A
Sbjct: 83  VDRLGNVLGYDIPSRRRRSVVSKEA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,445,773
Number of Sequences: 5004
Number of extensions: 24101
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)