Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0239.Seq
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                       77   6e-15
07_01_0756 + 5819367-5820038,5820847-5821005                           75   3e-14
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    35   0.031
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    27   6.1  
01_06_1458 + 37512954-37513112,37513217-37513324,37513357-375134...    27   8.1  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 77.0 bits (181), Expect = 6e-15
 Identities = 35/54 (64%), Positives = 43/54 (79%)
 Frame = +2

Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDNXGHIGLGV 415
           +KE +I++  + P L DEV+KI PVQKQTRAGQRTR KA V +GDN GH+GLGV
Sbjct: 72  VKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGV 124



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 22/36 (61%), Positives = 31/36 (86%)
 Frame = +3

Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           ++++++WVPVTKLGRLV+EG+  K+E IYL SLP K
Sbjct: 38  RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 74.5 bits (175), Expect = 3e-14
 Identities = 37/68 (54%), Positives = 46/68 (67%)
 Frame = +2

Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDN 391
           K  +  E  L    +KE +I++  + P L DEV+KI PVQKQTRAGQRTR KA V +GD 
Sbjct: 61  KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119

Query: 392 XGHIGLGV 415
            GH+GLGV
Sbjct: 120 DGHVGLGV 127



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 23/36 (63%), Positives = 31/36 (86%)
 Frame = +3

Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           ++++++WVPVTKLGRLV+E KI K+E IYL SLP K
Sbjct: 41  RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 34.7 bits (76), Expect = 0.031
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +2

Query: 299 NDEVLKIMPVQKQTRAGQRTRXKAXVAIGDNXGHIGLGV 415
           ++ V+++  V K  + G++   +A V +GD  GH+G+GV
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGV 209


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 138 HGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPPLLNDGL 7
           +GR H     D RG+ L+ +++  R +  V++ E   P L  GL
Sbjct: 48  YGRIHFPGDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGL 91


>01_06_1458 +
           37512954-37513112,37513217-37513324,37513357-37513431,
           37513520-37513581,37513690-37513756,37514161-37514274,
           37514357-37514443,37514571-37514641,37514718-37514783,
           37514941-37515027,37515127-37515202,37515321-37515424,
           37515550-37515583
          Length = 369

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 16/70 (22%), Positives = 26/70 (37%)
 Frame = -3

Query: 348 PARVCFXTGMIFRTSSFRDGPRKKSMISNSLMVKKTSKCSRVCRFFLREQDGRVW*QEPT 169
           P   C  +  +       +  +K  ++SN + VK      R C   + E+D      +P 
Sbjct: 73  PGNNCHLSQFLVSEIEIGEEQKKLDVLSNEVFVKALVSSGRTC-VLVSEEDEEATFVDPA 131

Query: 168 LSGLPCRAHD 139
           L G  C   D
Sbjct: 132 LRGKYCVCFD 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,009,686
Number of Sequences: 37544
Number of extensions: 171965
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)