Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0239.Seq
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              102   1e-22
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     29   1.6  
SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  102 bits (245), Expect = 1e-22
 Identities = 50/66 (75%), Positives = 56/66 (84%), Gaps = 1/66 (1%)
 Frame = +2

Query: 221 QTREHLLVF-FTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDNXG 397
           +T EH+ +F   IKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTR KA VAIGD+ G
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 398 HIGLGV 415
           H+GLGV
Sbjct: 84  HVGLGV 89



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 23/30 (76%), Positives = 25/30 (83%)
 Frame = +3

Query: 171 WVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           WVPVTKLGRLV++ KI  LE IYLFSLP K
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIK 37


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 406 TNMTXVVANGNXCLXTCALSGTCLFLXRHDL*NLIIQGRAEEEI 275
           TNMT + + G  CL     + TC+ L   DL NL+ + R ++E+
Sbjct: 257 TNMTEIYSTGKVCL-NITRNNTCMSLD-PDLGNLMSRSRNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 406 TNMTXVVANGNXCLXTCALSGTCLFLXRHDL*NLIIQGRAEEEI 275
           TNMT + + G  CL     + TC+ L   DL NL+ + R ++E+
Sbjct: 541 TNMTEIYSTGKVCL-NITRNNTCMSLD-PDLGNLMSRSRNQDEL 582


>SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 286 EEEINDLEFFDGKE 245
           EEE+ DLEFFDG E
Sbjct: 17  EEELPDLEFFDGAE 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,400,159
Number of Sequences: 59808
Number of extensions: 198016
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)