Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0239.Seq
(419 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml prot... 102 2e-22
U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal prot... 102 2e-22
U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal prot... 102 2e-22
AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p pro... 102 2e-22
AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA... 102 2e-22
BT029103-1|ABJ17036.1| 823|Drosophila melanogaster IP14290p pro... 31 0.83
AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA... 31 0.83
BT003459-1|AAO39462.1| 925|Drosophila melanogaster RH30917p pro... 29 3.3
AE014298-780|AAF46066.2| 725|Drosophila melanogaster CG33080-PB... 29 3.3
AE014298-779|AAF46068.2| 925|Drosophila melanogaster CG33080-PA... 29 3.3
>X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml protein
S2 protein.
Length = 267
Score = 102 bits (245), Expect = 2e-22
Identities = 52/68 (76%), Positives = 53/68 (77%)
Frame = +2
Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDN 391
K + E L IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTR KA VAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 392 XGHIGLGV 415
GHIGLGV
Sbjct: 117 NGHIGLGV 124
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +3
Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
KED KEWVPVTKLGRLVREGKI LE IYL+SLP K
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72
>U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 102 bits (245), Expect = 2e-22
Identities = 52/68 (76%), Positives = 53/68 (77%)
Frame = +2
Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDN 391
K + E L IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTR KA VAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 392 XGHIGLGV 415
GHIGLGV
Sbjct: 117 NGHIGLGV 124
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +3
Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
KED KEWVPVTKLGRLVREGKI LE IYL+SLP K
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72
>U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 102 bits (245), Expect = 2e-22
Identities = 52/68 (76%), Positives = 53/68 (77%)
Frame = +2
Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDN 391
K + E L IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTR KA VAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 392 XGHIGLGV 415
GHIGLGV
Sbjct: 117 NGHIGLGV 124
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +3
Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
KED KEWVPVTKLGRLVREGKI LE IYL+SLP K
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72
>AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p
protein.
Length = 267
Score = 102 bits (245), Expect = 2e-22
Identities = 52/68 (76%), Positives = 53/68 (77%)
Frame = +2
Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDN 391
K + E L IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTR KA VAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 392 XGHIGLGV 415
GHIGLGV
Sbjct: 117 NGHIGLGV 124
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +3
Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
KED KEWVPVTKLGRLVREGKI LE IYL+SLP K
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72
>AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA
protein.
Length = 267
Score = 102 bits (245), Expect = 2e-22
Identities = 52/68 (76%), Positives = 53/68 (77%)
Frame = +2
Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDN 391
K + E L IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTR KA VAIGDN
Sbjct: 57 KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116
Query: 392 XGHIGLGV 415
GHIGLGV
Sbjct: 117 NGHIGLGV 124
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +3
Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
KED KEWVPVTKLGRLVREGKI LE IYL+SLP K
Sbjct: 37 KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72
>BT029103-1|ABJ17036.1| 823|Drosophila melanogaster IP14290p
protein.
Length = 823
Score = 30.7 bits (66), Expect = 0.83
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 159 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 16
L C H D R+H ++GL + V+ + REN VH + ++ LLN
Sbjct: 359 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 407
>AE014297-4030|AAF56644.2| 1958|Drosophila melanogaster CG5521-PA
protein.
Length = 1958
Score = 30.7 bits (66), Expect = 0.83
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 159 LPCRAHDHGRDHDRVHEDRRGLYLHRVIRIRREN-RHVHRLEQRPPLLN 16
L C H D R+H ++GL + V+ + REN VH + ++ LLN
Sbjct: 325 LDCTLHIEDVDQVRLHGYQQGLIVRDVLYVNRENINFVHEVYRQAFLLN 373
>BT003459-1|AAO39462.1| 925|Drosophila melanogaster RH30917p
protein.
Length = 925
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 185 QTRPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLG 289
Q P R+K R+T+++ + F I F II F +G
Sbjct: 233 QAFPQLIRKKKRETKDYKIKIFVIIMFFIIIFLIG 267
>AE014298-780|AAF46066.2| 725|Drosophila melanogaster CG33080-PB,
isoform B protein.
Length = 725
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 185 QTRPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLG 289
Q P R+K R+T+++ + F I F II F +G
Sbjct: 33 QAFPQLIRKKKRETKDYKIKIFVIIMFFIIIFLIG 67
>AE014298-779|AAF46068.2| 925|Drosophila melanogaster CG33080-PA,
isoform A protein.
Length = 925
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 185 QTRPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLG 289
Q P R+K R+T+++ + F I F II F +G
Sbjct: 233 QAFPQLIRKKKRETKDYKIKIFVIIMFFIIIFLIG 267
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,839
Number of Sequences: 53049
Number of extensions: 290076
Number of successful extensions: 1966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1271883306
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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