Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0239.Seq
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    79   1e-15

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 41/54 (75%), Positives = 44/54 (81%)
 Frame = +2

Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRXKAXVAIGDNXGHIGLGV 415
           IKEFEIID  L  +L DEVLKI PVQKQT AGQRTR KA VAIGD+ GH+GLGV
Sbjct: 85  IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGV 137



 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 24/35 (68%), Positives = 26/35 (74%)
 Frame = +3

Query: 156 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           E + EW PVTKLGRLV+E KI  LE IYL SLP K
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,248,870
Number of Sequences: 27780
Number of extensions: 141362
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)