Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0237.Seq
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.2  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   2.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   4.8  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   4.8  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 374 KCSACTKCIKSDRIELNTP 430
           KC+ C +CI+SD +  N P
Sbjct: 179 KCNLCYECIESDELRANCP 197


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 450 FTCVNCNGVFNSIRSLLMHLVHAEH 376
           FTC+ CN  F S+ ++  H+    H
Sbjct: 259 FTCLTCNREFKSLEAVRAHMQQKGH 283


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 324 LIRDNNGRCTPPAVCKQSARRALNASKATESN*IRHCN 437
           +IR+NN +  P  V K  A + L A +  +   I HC+
Sbjct: 607 VIRENNYKGLPLIVVKSFALQGLQALRLLQGQNIIHCD 644


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 5   FFNHFIYLFKTCKTSMISPLHIVYNKEEKKNLIF 106
           F N+ +  FK C      PL +VY   +K  L+F
Sbjct: 88  FCNNALQNFKLCYDDETLPLWMVYVLNDKSELVF 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,449
Number of Sequences: 5004
Number of extensions: 46289
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)