Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0237.Seq
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0080 - 28208043-28208138,28208187-28208257,28208300-282086...    28   4.9  
05_01_0111 - 752045-752641                                             28   6.5  
06_03_1249 - 28688997-28689248,28689469-28689533,28690016-286900...    27   8.5  
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425...    27   8.5  
05_01_0275 - 2136047-2136202,2137072-2137263,2137345-2137506           27   8.5  

>11_08_0080 -
           28208043-28208138,28208187-28208257,28208300-28208603,
           28210483-28211544
          Length = 510

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +2

Query: 89  KKNLIFYL*PPQNLFSILLDGRRVLIDVCGTHILSML---RR*DMSFRVLTLLDVRVATP 259
           + NL  Y+ P  N+ ++LL G  +L+      +LS+L   RR   + R+  L  VRV TP
Sbjct: 105 RANLSPYV-PATNV-TLLLAGNEILLSPDPNLVLSLLPAMRRLAQALRLEGLTGVRVTTP 162

Query: 260 H 262
           H
Sbjct: 163 H 163


>05_01_0111 - 752045-752641
          Length = 198

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 465 AKERSFTCVNCNGVFNSIRSLLMH 394
           A ER+F C  CN VF S ++L  H
Sbjct: 46  APERAFVCKTCNRVFPSFQALGGH 69


>06_03_1249 -
           28688997-28689248,28689469-28689533,28690016-28690093,
           28691480-28691824,28693314-28693510,28695601-28696601
          Length = 645

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 134 SILLDGRRVLIDVCGTHILSMLRR*DMSFRVLTLLD 241
           ++LLDG    +D+CG  +L++ R+  M F++  + D
Sbjct: 483 AVLLDG----VDICGIDVLALRRKVGMLFQLPAMFD 514


>05_04_0288 +
           19839597-19839821,19841882-19842107,19842494-19842582,
           19845184-19845387,19845463-19845717,19845796-19846011,
           19846611-19846766,19846880-19847039,19847702-19847788,
           19847789-19847940,19848006-19848143,19848714-19848788,
           19849166-19849444
          Length = 753

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 577 KHALSNVYHQSAVAETKLEREQSDIISVYMKGNYILHSEGAVL 449
           +HALS       V +  L  E+   +  Y K N+I H  G +L
Sbjct: 560 EHALSRKEILEKVEKWTLASEEESWLDEYEKSNFICHISGLIL 602


>05_01_0275 - 2136047-2136202,2137072-2137263,2137345-2137506
          Length = 169

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 289 RLLLVWEVQMWRCDADIEE 233
           R + VWEVQ+WR D    E
Sbjct: 115 RTIQVWEVQIWRIDPSTSE 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,845,623
Number of Sequences: 37544
Number of extensions: 321070
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)