Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0237.Seq
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.70 
SB_52786| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)                        29   2.1  
SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)           29   3.7  
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             28   4.9  
SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   4.9  
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              27   8.6  
SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)                27   8.6  
SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)                    27   8.6  
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 757

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 459 ERSFTCVNCNGVFNSIRSLLMHL 391
           E+ + CVNCN  F+S  SL +H+
Sbjct: 635 EKPYACVNCNKAFSSSSSLSLHM 657


>SB_52786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 462 KERSFTCVNCNGVFNSIRSLLMH-LVHAEHFAY 367
           KER F C+ C   F    SL  H L+H++H  Y
Sbjct: 269 KERVFRCLECGKEFRRPSSLSTHKLIHSDHKPY 301


>SB_57| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1498

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 459 ERSFTCVNCNGVFNSIRSLLMHL-VHAEHFAYRPPAECTFRYYLELKXNINMLAKNK 292
           ER FTC  C   F     + +HL  H    A++    C  R+   +  N +ML  N+
Sbjct: 532 ERPFTCSECGQAFKRFNDMNIHLKTHTSGDAFKCNT-CDKRFCSAVNLNRHMLCHNQ 587


>SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)
          Length = 554

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 468 TAKERSFTCVNCNGVFNSIRSLLMHL 391
           T  ++SFTC +C+ ++ S+ +L MH+
Sbjct: 439 THHKKSFTCKHCDKIYVSLGALKMHI 464


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 142 TRRQTRPH*CMWHPYSLYASAIGHVVSRSHPPRCPRRN-ATFEPPKR 279
           TRR+ R    + +P  LY SA    +SR+  P  PRR+ A +  P R
Sbjct: 87  TRRKERIENIIDYPAMLYGSASLAKISRNASPANPRRSPAPYNSPSR 133


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 574  HALSNVYHQSAVAETKLEREQSDIISVYMKGNYILHSEGAVLYVR---QLQWRIQFDSV 407
            HA+   +  S  + T  E ++  ++++  K N  LH     L  R    ++W+++F++V
Sbjct: 852  HAILREFISSDQSPTMKEAKEDHVVTLSAKENESLHKAAKTLSARLFILIEWQLRFETV 910


>SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 336

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 459 ERSFTCVNCNGVFNSIRSLLMHL-VHAEHFAYR 364
           E+ F C  C+  FN + +L  H+  H ++  Y+
Sbjct: 277 EKPFQCTKCHRAFNKMSNLKFHMHTHTDNLPYQ 309


>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 462 KERSFTCVNCNGVFNSIRSLLMHL-VH 385
           KE+ F C  CN  F + ++L++H+ VH
Sbjct: 125 KEKPFACSTCNKAFATKQTLIVHIRVH 151


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 265  QMWRCDADIEEGENAKRHVLSPKHRENM 182
            Q+WR DAD+ +GE  +   + P+  +++
Sbjct: 1012 QLWRGDADVRQGEPQRTQEVEPQWMKDL 1039


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 556  YHQSAVAETKLEREQSDIISVYMKGNYILHS 464
            + ++ +AE ++E E S    VYM  N +LH+
Sbjct: 1087 HEEAMLAEIEIEEEDSSEHEVYMDENVVLHA 1117


>SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 506

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -3

Query: 523 EREQSDIISVYMKGNYILHSEGAVLYVRQLQWRIQFDSVAFDAFSARR----ALCLQ 365
           E E  + + VYMK     HS+  V    QL WR  F + A+   +  +    +LCLQ
Sbjct: 233 ETEALERLEVYMKKEKKKHSQPPVSLHGQLLWREFFTTAAYKTPNFNKMVGNSLCLQ 289


>SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)
          Length = 309

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -3

Query: 562 NVYHQSAVAETKLEREQSDIISVYMKGNYIL 470
           ++  +SA+     ER + +I+++ M+GN++L
Sbjct: 8   SIEFRSAMKRPSKERNEREILAIQMRGNFVL 38


>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 330 ELKXNINMLAKNKYVYYSFGRFKCGVA 250
           EL  N N+  +N ++ Y+FG+   GV+
Sbjct: 275 ELTDNFNLYCQNAFLIYNFGKVLTGVS 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,834
Number of Sequences: 59808
Number of extensions: 370883
Number of successful extensions: 1581
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)