Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0237.Seq
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-34|CAD31836.1|  248|Caenorhabditis elegans Hypothetical...    31   0.82 
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U67951-2|AAB07570.2|  302|Caenorhabditis elegans Regulator of fu...    29   2.5  
U67951-1|AAQ65207.1|  315|Caenorhabditis elegans Regulator of fu...    29   2.5  
AY115477-1|AAM55473.1|  303|Caenorhabditis elegans zinc finger p...    29   2.5  
U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AL132948-34|CAD31836.1|  248|Caenorhabditis elegans Hypothetical
           protein Y39B6A.46 protein.
          Length = 248

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 468 TAKERSFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPP 358
           T++ R   C  C   FN+ + L  H   AEH A RPP
Sbjct: 106 TSQPRELYCFTCGDAFNNRKGLYRHGKTAEH-ATRPP 141


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +1

Query: 208 GHVVSRSHPPRCPRRNATFEPPKRVINVFVFRQHVNVXF*FEIITEGALRRRSVSK 375
           G     S P R  RRN   EPP RV    +  QHV     +    E  ++R  + K
Sbjct: 57  GETTENSSPERRGRRNIPTEPPFRVQITNISSQHVEEELIYYFGGESHIKRVDIRK 112


>AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical
           protein F12E12.5 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 462 KERS-FTC--VNCNGVFNSIRSLLMHLVHAEHFAYRPPAEC 349
           KERS F C  +NC+  F     +  HLV+  HF+Y   A C
Sbjct: 115 KERSHFDCPVLNCSMQFVFYEGVENHLVNHHHFSYSESAPC 155


>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 463 RCARCNFPSCKRL*YRSVRVQASSPRRRSGGTHXKAHV 576
           RCA C +P  K+   R+    A S RRR+ GT    H+
Sbjct: 33  RCASCGYPDAKK---RTYNWGAKSIRRRTTGTGRTRHL 67


>U67951-2|AAB07570.2|  302|Caenorhabditis elegans Regulator of
           fusion protein 2,isoform a protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 459 ERSFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKXNINMLAKNKYVYY 280
           ER F C  CN VF    +L    +H    +   P +CT     +L  N +   K+ +V+ 
Sbjct: 136 ERPFLCDVCNKVFARSENL---KIHKRIHSGEKPFQCTHNGCTKLFANSSDRKKHMHVHS 192

Query: 279 SFGRFKC 259
           S   + C
Sbjct: 193 SHKPYSC 199


>U67951-1|AAQ65207.1|  315|Caenorhabditis elegans Regulator of
           fusion protein 2,isoform b protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 459 ERSFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKXNINMLAKNKYVYY 280
           ER F C  CN VF    +L    +H    +   P +CT     +L  N +   K+ +V+ 
Sbjct: 149 ERPFLCDVCNKVFARSENL---KIHKRIHSGEKPFQCTHNGCTKLFANSSDRKKHMHVHS 205

Query: 279 SFGRFKC 259
           S   + C
Sbjct: 206 SHKPYSC 212


>AY115477-1|AAM55473.1|  303|Caenorhabditis elegans zinc finger
           protein REF-2 protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 459 ERSFTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKXNINMLAKNKYVYY 280
           ER F C  CN VF    +L    +H    +   P +CT     +L  N +   K+ +V+ 
Sbjct: 137 ERPFLCDVCNKVFARSENL---KIHKRIHSGEKPFQCTHNGCTKLFANSSDRKKHMHVHS 193

Query: 279 SFGRFKC 259
           S   + C
Sbjct: 194 SHKPYSC 200


>U55365-8|AAA98573.2|  383|Caenorhabditis elegans Hypothetical
           protein C12D5.2 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 436 IDARKGPLLRCARCNFPSC 492
           +D R  PLLRC  C F  C
Sbjct: 66  LDKRTEPLLRCRACRFKKC 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,445,007
Number of Sequences: 27780
Number of extensions: 274028
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)