Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0237.Seq
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.42 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   0.56 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.1  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -1

Query: 450 FTCVNCNGVFNSIRSLLMHLVHAEHFAYRPPAECTFRYYLELKXNINMLAKNKYVYY 280
           F C  CN +  S+  L  H+   ++   RP  E        +  ++N L  +K +Y+
Sbjct: 3   FRCEPCNKILTSLTRLRRHI---QNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 459 ERSFTCVNCNGVFNSIRSLLMHL 391
           ++SF+C  C  V+ S+ +L MH+
Sbjct: 14  KKSFSCKYCEKVYVSLGALKMHI 36


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 301  EKQIRLLLVWEVQMWRCDADIE 236
            E + RLL  W V+M R +AD E
Sbjct: 1219 ESKGRLLGFWRVEMPRSNADYE 1240


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 204 DRTCRFAFSPSSMSASQRHI 263
           ++TC + + PS+   S+ H+
Sbjct: 385 EKTCYYPYHPSTQEDSEEHL 404


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 204 DRTCRFAFSPSSMSASQRHI 263
           ++TC + + PS+   S+ H+
Sbjct: 385 EKTCYYPYHPSTQEDSEEHL 404


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 432 NGVFNSIRSLLMHLVHAEHFAY 367
           NGVF SI SLL+  +   H  +
Sbjct: 542 NGVFTSIASLLLLNLSENHIEW 563



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = +3

Query: 111 YDLHRICLASYSTADASSLMYVAPIFSLCFGDRT 212
           Y+ H   L      DA       P    C+ DRT
Sbjct: 739 YEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRT 772


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 144 STADASSLMYVAPIFSLCFGDRTCRFAFS 230
           + A +++L   A + +   GD++CR+  S
Sbjct: 125 TAASSAALAAAAAVDAATAGDKSCRYTAS 153


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 223 RSHPPRCPRRNATFEP 270
           + H PR  R   TFEP
Sbjct: 153 KRHHPRYKRPRTTFEP 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,957
Number of Sequences: 438
Number of extensions: 3374
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)