Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0237.Seq
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26030.1 68417.m03748 hypothetical protein                          31   0.77 
At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein ...    28   4.1  

>At4g26030.1 68417.m03748 hypothetical protein 
          Length = 220

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = -1

Query: 462 KERSFTCVNCNGVFNSIRSLLMH--LVHAEH 376
           K+ SF C+ CN +F++ + L++H  L+H+++
Sbjct: 154 KDSSFICLKCNSLFDTSQMLVVHTELIHSKN 184


>At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 329

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 450 FTCVNCNGVFNSIRSLLMHL 391
           +TC  CNGVFN+ +    H+
Sbjct: 244 YTCPKCNGVFNTSQKFAAHM 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,570
Number of Sequences: 28952
Number of extensions: 248338
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)