Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0236.Seq
         (557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q60QF7 Cluster: Putative uncharacterized protein CBG218...    35   1.1  
UniRef50_Q5CW74 Cluster: Putative uncharacterized protein; n=3; ...    33   4.5  

>UniRef50_Q60QF7 Cluster: Putative uncharacterized protein CBG21838;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG21838 - Caenorhabditis
           briggsae
          Length = 488

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 446 SINSCFVCYWQVYKTTILLLN-ALAMT*CTTLSIYGN 339
           +INSCF+ YW  +K+TI  LN   ++  C  L I  N
Sbjct: 170 AINSCFLYYWTTHKSTIFALNFVFSLLLCIKLFIINN 206


>UniRef50_Q5CW74 Cluster: Putative uncharacterized protein; n=3;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 844

 Score = 33.1 bits (72), Expect = 4.5
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 249 PRFSSITIMHNSFILNIFSGNSCLPIVFRVITVNRQGSALCHCQGIQQQNRSFI 410
           P FS  T+M N+ IL+  + ++  P   R+I + R+ +    C  ++ +N+ FI
Sbjct: 126 PEFSENTLMSNNNILSFENVSNDYPGYNRIINIEREENVQMICINLKYRNKDFI 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 456,067,505
Number of Sequences: 1657284
Number of extensions: 7875046
Number of successful extensions: 14825
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14822
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)