Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0236.Seq
         (557 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   1.0  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    24   1.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   5.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.2  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   9.5  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 527 SHLKITGLKFINSLIVIFFYSPNKLPSSINSCFVCYWQVYKTTILLLNAL 378
           S  + + L+F  +++ IF Y P  L     +     + +YKTT +++  L
Sbjct: 310 SKFRPSSLRFCLNILSIFTYVPMILYCVYTTATYDSFMIYKTTNIIILGL 359


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 527 SHLKITGLKFINSLIVIFFYSPNKLPSSINSCFVCYWQVYKTTILLLNAL 378
           S  + + L+F  +++ IF Y P  L     +     + +YKTT +++  L
Sbjct: 35  SKFRPSSLRFCLNILSIFTYVPMILYCVYTTATYDSFMIYKTTNIIILGL 84


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/56 (21%), Positives = 26/56 (46%)
 Frame = +3

Query: 249 PRFSSITIMHNSFILNIFSGNSCLPIVFRVITVNRQGSALCHCQGIQQQNRSFINL 416
           PR +S+ + HNS +    +G S   + + ++ +N    +L     +   N   ++L
Sbjct: 418 PRLASLNLGHNSQLTLEINGLSFQGLEYTLLHLNLDNVSLSQVPALSTPNLLSLSL 473


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 497 INSLIVIFFYSPNKLPSSINSCFVCYWQVYKT 402
           + S ++++F     L S+     VCYW  + T
Sbjct: 6   VASFLLVYF--SGALVSATTDKVVCYWGTWST 35


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 150 AVGRYIFRKKNVVF 191
           A GR+ F KKN+ +
Sbjct: 168 ATGRFTFHKKNLYY 181


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 168 FRKKNVVFR*LTLRICCLF*FLIIYEFPRFS 260
           F ++++ F      +C LF  +  Y F +FS
Sbjct: 3   FSRRDIRFLRPIFAVCRLFALVPYYNFEKFS 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,956
Number of Sequences: 336
Number of extensions: 2473
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)