Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0236.Seq
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    28   0.81 
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   5.7  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.7  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   10.0 
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    25   10.0 
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   10.0 

>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 334  LKTIGRQEFPEKIFKIKELCIIVIDEN 254
            L+   R ++PE IF + + C++  D N
Sbjct: 1037 LRLAARTQYPESIFSVIKFCVVDFDNN 1063


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 546 STXPVGVPS*DHRTKIYQQFNCYF 475
           S  PVG P+ D R  +  + NC+F
Sbjct: 242 SFSPVGTPAGDFRISVQYRKNCHF 265


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 255 FSSITIMHNSFILNIFSGNSCLPIVFRV 338
           FS++T++ +SFI +I +    LPIV  V
Sbjct: 759 FSALTLVVSSFISHIVAAMVVLPIVHEV 786


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
 Frame = +3

Query: 258 SSITIMHNSFILNIFSGNSCLP--IVFRVITVNRQGSALCHC------QGIQQQN--RSF 407
           +SI  +H    + IF G+S +    V+   +V+ +G   C         G+   N  R +
Sbjct: 252 ASIRKVHPDTPIQIFGGHSHIRDFAVYDESSVSLEGGRYCETVGWLSIDGLAASNATRQY 311

Query: 408 INLPITNKTR 437
           +  P+TN+TR
Sbjct: 312 VGRPVTNETR 321


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -1

Query: 431 FVCYWQVYKTTILLLNALAMT*CTTLSIYGNDPENYRKTRV 309
           ++C+W +YK  IL           TL  +  +  ++ K  V
Sbjct: 172 YICHWLIYKILILAFGIKVKPLGDTLPTHNGETGSHSKATV 212


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -1

Query: 431 FVCYWQVYKTTILLLNALAMT*CTTLSIYGNDPENYRKTRV 309
           ++C+W +YK  IL           TL  +  +  ++ K  V
Sbjct: 172 YICHWLIYKILILAFGIKVKPLGDTLPTHNGETGSHSKATV 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,720
Number of Sequences: 5004
Number of extensions: 36697
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)