Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0236.Seq
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)                  28   5.9  
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
          Length = 834

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 56  IPLKMTKYKCINSN-KCFSHY*N*YNDYLSKLCRRAIHFSQEKC 184
           IP   +   C +S+  CFS   N Y +  + LC  A+H S ++C
Sbjct: 441 IPSSASHRLCADSHCNCFSMSNNLYINLSAFLCSIALHLSAQRC 484


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 89  NSNKCFSHY*N*YNDYLSKLCRRAIHFSQEKC 184
           NS  C SHY     DY+SK CR++  F    C
Sbjct: 35  NSGFCKSHY-----DYMSKNCRKSCDFCGGSC 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,286,643
Number of Sequences: 59808
Number of extensions: 248585
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)