Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0236.Seq
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical ...    31   0.56 
AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine re...    30   1.3  
Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr...    27   6.9  
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra...    27   6.9  
AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    27   6.9  
AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine re...    27   9.1  
AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical
           protein Y5H2B.4 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 455 LPSSINSCFVCYWQVYKTTILLLNALA 375
           L  S+N CF  YW  YKT + +L  L+
Sbjct: 163 LSCSLNLCFYQYWTTYKTIVYILTFLS 189


>AF016422-7|AAW88391.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 59 protein.
          Length = 296

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 461 NKLPSSINSCFVCYWQVYKTTI-LLLNALAMT*CTTLSIYGN 339
           N    S+NSC+  YW+ Y+  + L +  L++  C  L ++ N
Sbjct: 158 NNFGCSVNSCYHNYWKWYEQIMQLCIGTLSVVLCFRLFVWNN 199


>Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical
           protein F43A11.1 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = -1

Query: 533 WVSHLKITGLKFINSLIVIFFYSPNKLPSSINSCFVCYWQVYKTTILLLNALAMT 369
           W+S + I G+   NS IV  F   N   +++N   +C+++     I+L+NA  +T
Sbjct: 24  WLS-IGIFGIT-CNSAIVYIFLKENSEKTALN--IICFFRAVSNIIILINAFMIT 74


>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 446 SINSCFVCYWQVYKTTILLLN 384
           SIN+CF+ +W  YK  +  LN
Sbjct: 169 SINACFLKFWTSYKAIMFALN 189


>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical
           protein ZC101.2f protein.
          Length = 2389

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 703 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 729


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical
           protein ZC101.2e protein.
          Length = 3375

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 703 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 729


>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical
           protein ZC101.2c protein.
          Length = 2295

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 703 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 729


>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical
           protein ZC101.2a protein.
          Length = 2482

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 703 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 729


>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical
           protein ZC101.2b protein.
          Length = 1160

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 703 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 729


>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical
           protein ZC101.2f protein.
          Length = 2389

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 703 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 729


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical
           protein ZC101.2e protein.
          Length = 3375

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 703 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 729


>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical
           protein ZC101.2c protein.
          Length = 2295

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 703 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 729


>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical
           protein ZC101.2a protein.
          Length = 2482

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 703 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 729


>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
           proteoglycan protein.
          Length = 2481

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 CLPIVFRVITVNRQGSALCHCQGIQQQ 395
           C P  F +   N QG   C C G+ QQ
Sbjct: 702 CAPNSFGLAPTNPQGCIPCFCSGVTQQ 728


>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 153 VGRYIFRKKNVVFR*LTLRICCLF*FLIIYEFPRFSSITIMHN-SFILNIFSGNSCLPIV 329
           +G+ ++R KN+ +  L   + CL  F+ +  F      TI  N    LN   G   L I+
Sbjct: 12  IGQIMYRPKNICYHFLVTSLLCLVLFVNVITF-----FTIARNFEEALNKLKGAPKLKIM 66

Query: 330 FRVITVNR 353
           F+ + + R
Sbjct: 67  FQSVDIIR 74


>AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 13 protein.
          Length = 292

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 455 LPSSINSCFVCYWQVYKTTILLL 387
           L  +INSCF  YW  +K+ +  L
Sbjct: 157 LGCAINSCFYRYWTTHKSIVFAL 179


>AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical
           protein Y45G12C.8 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 446 SINSCFVCYWQVYKTTILLLNAL 378
           +INSC+  YW +++ T+  LN +
Sbjct: 163 AINSCYYFYWVLHEQTVGCLNVV 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,984,733
Number of Sequences: 27780
Number of extensions: 203271
Number of successful extensions: 447
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)