Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0236.Seq
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.69 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.8  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   6.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   6.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 503 KFINSLIVIFFYSPNKLPSSINSCFVCYWQVYKT 402
           + INS+  I   +    P+S     +CYW +Y T
Sbjct: 460 RHINSVSYIDKVARIVFPASFGLLNICYWVIYVT 493


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 231 LIIYEFPRFSSITIMHNSF 287
           L+IY+F + SS  I H+ F
Sbjct: 335 LLIYDFFKDSSFRIQHHFF 353


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 434 CFVCYWQVYKTTILLLN 384
           C+ C W+  KTT  ++N
Sbjct: 187 CYFCIWKGVKTTGKVVN 203


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 74  KYKCINSNKCFSHY*N*YNDYLSKLCRRAIHFSQ 175
           KY   N+N   ++Y N YN+   KL    I+  Q
Sbjct: 330 KYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQ 363


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -1

Query: 515 ITGLKFINSLIVIFFYSPNKLPSSINSC 432
           +  L+ +   +V+  Y P + P  +N C
Sbjct: 9   VMSLRALKYPMVVHVYHPYRQPDGMNQC 36


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -1

Query: 515 ITGLKFINSLIVIFFYSPNKLPSSINSC 432
           +  L+ +   +V+  Y P + P  +N C
Sbjct: 9   VMSLRALKYPMVVHVYHPYRQPDGMNQC 36


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 188 NYIFLAKNVSPYGTTLRDNHCINSN 114
           N+  L  NV      +R+ HC+N+N
Sbjct: 397 NFRILGANVKEL---IRNTHCVNNN 418


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 407 YKPANNKQNKSLYWK 451
           Y   NN  NK LY+K
Sbjct: 104 YNYNNNNYNKKLYYK 118


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 14  NKLQSIK-SISVSATIPLKMTKYKCINSNKCFSH 112
           +K  S+K ++SV   I  K   YKC    + F H
Sbjct: 126 SKSFSVKENLSVHRRIHTKERPYKCDVCERAFEH 159


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 125 YNDYLSKLCRRAIHFSQE 178
           +ND +S L   A+H  QE
Sbjct: 649 HNDLMSPLDEPAVHIKQE 666


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,715
Number of Sequences: 438
Number of extensions: 2765
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)