Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0236.Seq
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01175.1 68416.m00022 expressed protein                             29   2.1  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    28   3.7  
At2g20230.1 68415.m02364 expressed protein                             28   3.7  
At3g06710.1 68416.m00794 expressed protein                             27   6.4  

>At3g01175.1 68416.m00022 expressed protein 
          Length = 401

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/79 (22%), Positives = 36/79 (45%)
 Frame = +3

Query: 198 LTLRICCLF*FLIIYEFPRFSSITIMHNSFILNIFSGNSCLPIVFRVITVNRQGSALCHC 377
           L L +C L  +L ++          ++N+F   +F+ +  +   FRVI   ++    CH 
Sbjct: 33  LVLFLCQLLIWLYLFFLWLLPPFQALYNAFSSVLFTFSKLVSSSFRVIMFKKE--VTCHI 90

Query: 378 QGIQQQNRSFINLPITNKT 434
           +  Q+   +  NL ++  T
Sbjct: 91  ESRQEIKNTLDNLELSTST 109


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly
            identical to retinoblastoma-related protein [Arabidopsis
            thaliana] GI:8777927; contains Pfam profiles: PF01858
            retinoblastoma-associated protein A domain, PF01857
            retinoblastoma-associated protein B domain
          Length = 1013

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
 Frame = +3

Query: 90   TVINALVTIRINTMI----ISQSCAVGRYIF------RKKNVVF-R*LTLRICCLF*FLI 236
            T IN L  +RIN M+    +SQ      Y F      ++ +++F R +   I C F    
Sbjct: 735  TKINKLAAVRINGMVERLQLSQQIRESVYCFFQHVLAQRTSLLFSRHIDQIILCCF---- 790

Query: 237  IYEFPRFSSITIMHNSFILNIFSGNSCLPIVFRVITVN 350
             Y   + S +++     I N      C P+VFR + V+
Sbjct: 791  -YGVAKISQMSLTFREIIYNYRKQPQCKPLVFRSVYVD 827


>At2g20230.1 68415.m02364 expressed protein
          Length = 270

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 446 SINSCFVCYWQVYKTTILLLNA 381
           +IN C +C++ + KT ++LL A
Sbjct: 124 AINGCCLCFYSILKTLLILLEA 145


>At3g06710.1 68416.m00794 expressed protein
          Length = 302

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 117 RINTMIISQSCAVGRYIFRKKNVVFR*LTLRICCLF*FLIIYEFPRFSSITIM 275
           R+  + + +  A+GR +F   N  F  LT+ IC  F F+++    R+ +I I+
Sbjct: 114 RLVGVAVHELGAIGRLLFFLDNKSFDALTISICVSFFFILLPFSFRWIAIAIV 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,930,415
Number of Sequences: 28952
Number of extensions: 173949
Number of successful extensions: 329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)