Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0235.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   8.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.1  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 381 HQLAQEKLHLQSQLN 337
           HQL  E LHL + +N
Sbjct: 510 HQLNTEVLHLSNAIN 524


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = -1

Query: 142 PNWRNNCRMQTVHTPN 95
           P WR    M   H PN
Sbjct: 654 PRWRQTLAMWLNHNPN 669


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 145 PPNWRNNCRMQTV 107
           PPN  NNC    V
Sbjct: 226 PPNTENNCAQPVV 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,773
Number of Sequences: 336
Number of extensions: 593
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)