Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0235.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0065 - 12527642-12528178,12531443-12531718                       28   3.6  
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702...    27   8.4  

>10_07_0065 - 12527642-12528178,12531443-12531718
          Length = 270

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 463 RHEQSTTAARVD--LHTHQARLQLAARRQPSARTGEAAF 353
           R E+ + AAR D  +HT  +   L AR   S RT +AAF
Sbjct: 231 RGEEKSQAARGDGAVHTRHSPPMLPARTPGSGRTDDAAF 269


>03_05_0491 -
           24868261-24869383,24869482-24869561,24870193-24870249,
           24870567-24870660,24871013-24871099,24871188-24871347,
           24871440-24871674
          Length = 611

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 91  SSTLNKKEGNYRNDSLSFKMKSRDWRI 11
           +ST  KKE +Y++     + K R WR+
Sbjct: 559 NSTKKKKEASYKHHKKPQRKKDRSWRV 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,153,315
Number of Sequences: 37544
Number of extensions: 81900
Number of successful extensions: 182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)