Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0232.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P04148 Cluster: Fibrohexamerin precursor; n=2; Bombyx|R...    38   0.12 
UniRef50_Q14UU6 Cluster: Low molecular weight silk protein; n=1;...    36   0.62 
UniRef50_O62605 Cluster: Fibrohexamerin precursor; n=2; Obtectom...    36   0.62 
UniRef50_A0CNK8 Cluster: Chromosome undetermined scaffold_22, wh...    35   1.4  
UniRef50_P0C035 Cluster: RING-H2 finger protein ATL1M; n=1; Arab...    33   5.8  
UniRef50_Q0B1F6 Cluster: Amino acid adenylation domain; n=2; Bac...    32   7.6  
UniRef50_P21190 Cluster: Meiosis-inducing protein 1; n=2; Saccha...    32   7.6  

>UniRef50_P04148 Cluster: Fibrohexamerin precursor; n=2; Bombyx|Rep:
           Fibrohexamerin precursor - Bombyx mori (Silk moth)
          Length = 220

 Score = 38.3 bits (85), Expect = 0.12
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 83  LDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPVPDPLLLNNYRLDIANSNIT-- 256
           L  A  P  I RPC   D  CI ++  +NSKC    G +P    +  ++ +I   N T  
Sbjct: 14  LASAGPPSPIYRPCYLDDYKCISDHLAANSKCIPGRGQIPSQYEIPVFQFEIPYFNATYV 73

Query: 257 -HNLTT 271
            HNL T
Sbjct: 74  DHNLIT 79


>UniRef50_Q14UU6 Cluster: Low molecular weight silk protein; n=1;
           Yponomeuta evonymellus|Rep: Low molecular weight silk
           protein - Yponomeuta evonymella (Bird-cherry ermine
           moth)
          Length = 217

 Score = 35.9 bits (79), Expect = 0.62
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 107 NIERPCPNFDLDCIREYFTSNSKCQITLGPVPDPLLLNNYRLD 235
           NI RPC   DL+CI++   +NS C+  +        ++N+R +
Sbjct: 19  NIVRPCHLQDLECIQDNLAANSHCKTNIAGTAPTATVSNFRFE 61


>UniRef50_O62605 Cluster: Fibrohexamerin precursor; n=2;
           Obtectomera|Rep: Fibrohexamerin precursor - Galleria
           mellonella (Wax moth)
          Length = 218

 Score = 35.9 bits (79), Expect = 0.62
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 41  FGLTVADEVDCESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITL-GPVPDPLLL 217
           F LTVA    CE+   PA+   N+ RPC   DL CIR+  ++NS C   + G +P   ++
Sbjct: 7   FALTVAL---CEAG--PAN---NVVRPCRLDDLKCIRDNISANSNCNANVRGSIPSEYVI 58

Query: 218 NNYRLDIANSNITH 259
             +  +    N ++
Sbjct: 59  PRFNFETPFFNASY 72


>UniRef50_A0CNK8 Cluster: Chromosome undetermined scaffold_22, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_22, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2020

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 262  FNNVSVRGL--NGNIVEFYINRKTEKLVLATEVKSLAFDSPQVVFKYN 399
            F N++V+ L  N N +E YIN K  K V  TEV +  F S +  F+Y+
Sbjct: 1264 FVNLTVQKLLFNLNGIEQYINEKESKFVRCTEVMAFKFTSQRNFFRYS 1311


>UniRef50_P0C035 Cluster: RING-H2 finger protein ATL1M; n=1;
           Arabidopsis thaliana|Rep: RING-H2 finger protein ATL1M -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 310

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 71  CESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQI---TLGPVPD 205
           C SDL   D  R + R    F +DCI  +F S+S C +   T+G V D
Sbjct: 123 CLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVED 170


>UniRef50_Q0B1F6 Cluster: Amino acid adenylation domain; n=2;
            Bacteria|Rep: Amino acid adenylation domain -
            Burkholderia cepacia (strain ATCC 53795 / AMMD)
          Length = 3018

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 215  EAADPVLAPALFDISNYS*NIHEYSPSRSSDKVFRYSSDHRPDLDQI 75
            E   P  A A F ++     I+ Y P+ +SD V  YS +  PDL  I
Sbjct: 2229 ETLQPATAQAWFRLNPGVRLINAYGPTEASDSVAHYSMERAPDLPAI 2275


>UniRef50_P21190 Cluster: Meiosis-inducing protein 1; n=2;
           Saccharomyces cerevisiae|Rep: Meiosis-inducing protein 1
           - Saccharomyces cerevisiae (Baker's yeast)
          Length = 360

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 158 NIHEYSPSRSSDKVFRYSSDHRPDLDQIHSLPHPPQSNRKT 36
           NIHE   S+++D   +Y     P  D IHS  +   SN K+
Sbjct: 215 NIHESINSKNTDSYSQYQDQFPPHTDNIHSFNNRHYSNHKS 255


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 482,571,119
Number of Sequences: 1657284
Number of extensions: 8855501
Number of successful extensions: 22655
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22642
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)