Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0232.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.33 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.3  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   4.1  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   7.1  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 357 FHFCCQHQFLSFSVDVKFNDIPIETSNAYVVKLCVILEF 241
           F F C + F  F  +  FND     +N Y   +CV  +F
Sbjct: 441 FPFIC-NSFTKFEFNTVFNDQRTVFANFYDAMICVAYKF 478


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -1

Query: 170 NYS*NIHE-YSPSRSSDKVFRYSSDHRPDLDQIHSLPH 60
           NY   IH  Y    +   ++     HRP L  +H  PH
Sbjct: 7   NYDDGIHPGYMDGGAGAGLYEPHVAHRPGLQGLHHSPH 44


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 296 ISLNFTSTEKLRNWCWQQK 352
           ISL   S      WCWQ +
Sbjct: 569 ISLGINSDALEPEWCWQNE 587


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 128 SDKVFRYSSDHRPDLDQIHSLPHPPQSNRKTK 33
           SD + RY  D++PD  +     + P    K +
Sbjct: 88  SDFIMRYLIDNKPDYWKALEAKYDPDGTYKKR 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,563
Number of Sequences: 336
Number of extensions: 2295
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)