Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0232.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    30   0.26 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   1.4  
SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc...    27   1.8  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    25   7.3  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   9.7  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   9.7  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 110 IERPCPN-FDLDCIREYFTSNSKCQITLGPV-PDPLLLNNYRLDIANSNITHN 262
           I+ PC + F  +CI+ +   N  C I   PV P+    NN   D AN +   N
Sbjct: 410 IQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNNTSTDSANGHNPSN 462


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 429  DCVDCEYXAATFTAXFPSICDLXLSKAKFSPTSKTLI 539
            D  D E   AT ++    +CD      K SP +KTL+
Sbjct: 1166 DGYDWEATRATISSAIEKLCDSSSQNDKISPEAKTLL 1202


>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
           VIII|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 66

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 292 GNIVEFYINRKTEKLVLATEVKSLAFDSPQVVFKYNRK 405
           G+ + FYIN+K    +L      + F  P +V KY+ +
Sbjct: 27  GSTIPFYINKKPLPTLLYFGTFGVIFSIPFIVVKYHNR 64


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  DCESDLDPADDPRNIERPCPNFDLDCIREYFTS 166
           +  +DL PA   ++I R   N+ +DC+  Y TS
Sbjct: 412 EINADLSPARSVQDITR---NYVMDCMDSYLTS 441


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 203 PVLAPALFDISNYS*NIHEYSPSRSSDKVFRYSSDHRPD-LDQIHSLPHPPQSNRKTK 33
           P+  P+L  I N     +E  PSRSS       S +  + L  + +L  P +++R TK
Sbjct: 478 PLRPPSLQGILNAEDRPYEIEPSRSSFATNDTGSYNNLELLSSVTNLKSPNENDRVTK 535


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 80  QIHSLPHPPQSNRKTKED 27
           Q HSLPHPP       ED
Sbjct: 236 QNHSLPHPPNMFEPPDED 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,835
Number of Sequences: 5004
Number of extensions: 39930
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)