Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0232.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0015 + 11669321-11670070 30 1.1
08_01_0048 + 335868-336682,338382-340386 27 7.5
11_06_0144 - 20608382-20610277 27 9.9
11_04_0369 - 16885918-16886080,16886235-16886671,16886767-168870... 27 9.9
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 27 9.9
03_03_0262 + 15968884-15969687 27 9.9
01_07_0030 + 40601063-40601182,40601684-40602116,40602217-406023... 27 9.9
>01_03_0015 + 11669321-11670070
Length = 249
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +2
Query: 44 GLTVADEVDCESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPVPDP 208
G D C ++ + D R + R F ++CI +F NS C + V P
Sbjct: 141 GAAPGDCAVCLAEFEAGDKARALPRCGHRFHVECIDAWFRENSTCPLCRADVEAP 195
>08_01_0048 + 335868-336682,338382-340386
Length = 939
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 47 LTVADEVDCESDLDP-ADDPRNIERPCPNFDLDCIREYFTSN 169
L + D+ D + +LDP A D RN R DCI +YFTS+
Sbjct: 46 LALMDDDD-DGELDPLAKDWRNHVREMAYDMEDCIDDYFTSH 86
>11_06_0144 - 20608382-20610277
Length = 631
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 200 VLAPALFDISNYS*NIHEYSPSRSSDKVFRYSSDHRPDLDQIHSL 66
+ APA D + +H+ SP S + + SSD P+ + S+
Sbjct: 218 ISAPAWIDDDHAGVTLHDVSPGSGSSNLDQESSDPAPNTSRSRSI 262
>11_04_0369 -
16885918-16886080,16886235-16886671,16886767-16887028,
16887050-16887353,16887771-16888166,16888531-16888579,
16889303-16889737
Length = 681
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 304 EFYINRKTEKLVLATEVKSLAFDSPQVVFKYNRKGKEPIVXVTVWIVNT 450
E +I R+ V TE+K LA+D+ VV +Y + V +NT
Sbjct: 60 EHWIIREESAKVRLTELKELAYDAEDVVDEYEYEANRVSTEVFERSLNT 108
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 99 IRGISKDLVRTSTWTVFVNILR 164
+RG+SK+ ++ S W V ++I+R
Sbjct: 18 VRGLSKEALKISVWRVTMSIMR 39
>03_03_0262 + 15968884-15969687
Length = 267
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 44 GLTVADEVDCESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPVPDPLL 214
G AD C ++L + R + R F ++C+ + SNS C + V D L
Sbjct: 85 GDPAADCAVCITELAAGESARVLPRCGHGFHVECVDMWLRSNSTCPLCRCAVIDEAL 141
>01_07_0030 +
40601063-40601182,40601684-40602116,40602217-40602326,
40602506-40602550
Length = 235
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 35 SFFGLTVADEVDCESDLDP--ADDPRNIERPCPNFDLDCIREYFTSNSKCQI 184
SF +T DE C + L+ D+P+ I + ++ L CI E+ + C I
Sbjct: 167 SFAVVTSEDEDVCPTCLEEYTPDNPKIIAKCSHHYHLSCIYEWMERSDTCPI 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,836,653
Number of Sequences: 37544
Number of extensions: 238688
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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