Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0232.Seq
         (548 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U95760-1|AAB54001.1| 1547|Drosophila melanogaster Sno protein.         29   5.5  
AY060918-1|AAL28466.1|  191|Drosophila melanogaster GM06087p pro...    29   5.5  
AE014298-1864|AAN09651.1|  191|Drosophila melanogaster CG1903-PA...    29   5.5  
AE014298-1863|AAF48240.1| 1547|Drosophila melanogaster CG1903-PB...    29   5.5  

>U95760-1|AAB54001.1| 1547|Drosophila melanogaster Sno protein.
          Length = 1547

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 59  DEVDCESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPVPD-PLLLNNYRLD 235
           DE D  SD D  +DP  IE P    DL+    Y   N +  + + P    P+ ++  ++ 
Sbjct: 20  DEDDSGSDFDDDEDPDQIEVPGGGRDLNTAVTY-AQNIRSGVGVAPKGGIPIPISGAKIV 78

Query: 236 IANSNI 253
           + N+ I
Sbjct: 79  VGNNKI 84


>AY060918-1|AAL28466.1|  191|Drosophila melanogaster GM06087p
           protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 59  DEVDCESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPVPD-PLLLNNYRLD 235
           DE D  SD D  +DP  IE P    DL+    Y   N +  + + P    P+ ++  ++ 
Sbjct: 20  DEDDSGSDFDDDEDPDQIEVPGGGRDLNTAVTY-AQNIRSGVGVAPKGGIPIPISGAKIV 78

Query: 236 IANSNI 253
           + N+ I
Sbjct: 79  VGNNKI 84


>AE014298-1864|AAN09651.1|  191|Drosophila melanogaster CG1903-PA,
           isoform A protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 59  DEVDCESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPVPD-PLLLNNYRLD 235
           DE D  SD D  +DP  IE P    DL+    Y   N +  + + P    P+ ++  ++ 
Sbjct: 20  DEDDSGSDFDDDEDPDQIEVPGGGRDLNTAVTY-AQNIRSGVGVAPKGGIPIPISGAKIV 78

Query: 236 IANSNI 253
           + N+ I
Sbjct: 79  VGNNKI 84


>AE014298-1863|AAF48240.1| 1547|Drosophila melanogaster CG1903-PB,
           isoform B protein.
          Length = 1547

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 59  DEVDCESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPVPD-PLLLNNYRLD 235
           DE D  SD D  +DP  IE P    DL+    Y   N +  + + P    P+ ++  ++ 
Sbjct: 20  DEDDSGSDFDDDEDPDQIEVPGGGRDLNTAVTY-AQNIRSGVGVAPKGGIPIPISGAKIV 78

Query: 236 IANSNI 253
           + N+ I
Sbjct: 79  VGNNKI 84


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,922,335
Number of Sequences: 53049
Number of extensions: 425672
Number of successful extensions: 1058
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)