Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0232.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger) fa...    34   0.054
At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger) fa...    33   0.17 
At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger) fa...    31   0.51 
At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger) fa...    31   0.51 
At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger) fa...    31   0.67 
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr...    29   2.0  
At4g38830.1 68417.m05497 protein kinase family protein contains ...    29   2.7  
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    28   4.7  
At1g60400.1 68414.m06800 F-box family protein contains F-box dom...    28   4.7  
At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger) fa...    28   4.7  

>At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 227

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 71  CESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPVPDP 208
           C S+ +  D+ R + +   +F +DCI  +F S S C +   PV  P
Sbjct: 111 CLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPVQPP 156


>At1g53820.1 68414.m06126 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 310

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 71  CESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQI---TLGPVPD 205
           C SDL   D  R + R    F +DCI  +F S+S C +   T+G V D
Sbjct: 123 CLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVED 170


>At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger)
           family protein (ATL4) contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 334

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 71  CESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPV 199
           C S  +P D  R +   C  F  DCI  +  SN  C +   P+
Sbjct: 120 CLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPL 162


>At1g72310.1 68414.m08359 zinc finger (C3HC4-type RING finger)
           family protein (ATL3) identical to RING-H2 zinc finger
           protein (ATL3) GB:AF132013 (Arabidopsis thaliana)
          Length = 324

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 71  CESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPVPDPLLLNNYRLDIANSN 250
           C S+L   D  R + +   +F ++CI  +F S+S C I    V  P   ++ R++    N
Sbjct: 130 CLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDN 189

Query: 251 ITHNLTT 271
             +  TT
Sbjct: 190 AENAGTT 196


>At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger)
           family protein (ATL5) identical to RING-H2 zinc finger
           protein ATL5 [Arabidopsis thaliana]
           gi|4928401|gb|AAD33583
          Length = 257

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 71  CESDLDPADDPRNIERPCPNFDLDCIREYFTSNSKCQITLGPV 199
           C S+ +  D+ R + +    F +DCI  +F S S C +   PV
Sbjct: 116 CLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158


>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1030

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 134 DLDCIREYFTSNSKCQITLGPVPDPLLLNNYRLDIANSNITHNLTT*AFEVSMGISLNFT 313
           +LD     F +N+      GPVP  ++ +   LD++++N T   T    ++ + +  ++ 
Sbjct: 320 NLDAFNFMFLNNNSLT---GPVPQFIINSKENLDLSDNNFTQPPTLSCNQLDVNLISSYP 376

Query: 314 S-TEKLRNWCWQQ 349
           S T+    WC ++
Sbjct: 377 SVTDNSVQWCLRE 389


>At4g38830.1 68417.m05497 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 665

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = +3

Query: 282 RSQWE--YR*ILHQQKN*ETGAGNRSEKLSI*FSTGGF*IQQER*RAHCRXDCV--DCEY 449
           R  WE   R +L   KN  +  G RS+K  +   T G   Q       C  D    DC Y
Sbjct: 151 RDSWEKSLRGLLEGLKNRASVIG-RSKKNFVVGETSGPSFQTLFGLVQCTPDISEEDCSY 209

Query: 450 XAATFTAXFPSICDLXLSKAKFSPT 524
             +   A  PS CD+ +     SP+
Sbjct: 210 CLSQGIAKIPSCCDMKMGSYVMSPS 234


>At1g74170.1 68414.m08590 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 191 GPVPDPLLLNNYRLDIANSNITHNL 265
           G +PD LLLN   LD+ N+ ++ NL
Sbjct: 703 GVIPDTLLLNVIVLDLRNNRLSGNL 727


>At1g60400.1 68414.m06800 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 98  DPRNIERPCPNFDLDCIREYFTSNSKCQITLGP 196
           DP N+E  CP  +  CIREY  S S    ++GP
Sbjct: 228 DP-NVEIDCPRLEYMCIREY-QSESFVVHSIGP 258


>At1g18780.1 68414.m02341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 325

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = +2

Query: 56  ADEVDCESD-----LDPADDPRNIER-PCPN-FDLDCIREYFTSNSKCQI 184
           A  V CE+D     L+  DD R+I   PC + FD +C+ E+F  +  C +
Sbjct: 267 ASGVVCENDVCTICLEEFDDGRSIVTLPCGHEFDEECVLEWFVRSHVCPL 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,628,496
Number of Sequences: 28952
Number of extensions: 202122
Number of successful extensions: 607
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)