Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0231.Seq
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.33 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   4.1  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   9.5  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   9.5  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 244 CPCTHSSSVQTPSTSGILCLEEKQQPEL 161
           C CTH   +   +   I+ ++E QQP L
Sbjct: 566 CMCTHKVDIPLNAIVEIVLVDEVQQPNL 593


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 244 CPCTHSSSVQTPSTSGILCLEEKQQPEL 161
           C CTH   +   +   ++ ++E Q P L
Sbjct: 566 CMCTHQVDIPLNAIVEVVLVDEVQSPNL 593


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 267 SRTRIMHKNLKAKEEGQCSN 326
           ++TR++H++L A+    C N
Sbjct: 609 AKTRVVHRDLAARNVLVCEN 628


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 350 LLGILQLPIAA 318
           LLGI+Q PI+A
Sbjct: 61  LLGIIQFPISA 71


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 350 LLGILQLPIAA 318
           LLGI+Q PI+A
Sbjct: 17  LLGIIQFPISA 27


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,319
Number of Sequences: 336
Number of extensions: 1964
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)