Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0231.Seq
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)                28   4.5  
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)                   27   7.9  
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)                 27   7.9  
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)               27   7.9  
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 178 FPQGIRCQKCLEFGHWSYEC 237
           +P   RC +C E GH SYEC
Sbjct: 101 YPDKSRCYECGEGGHLSYEC 120


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 193 RCQKCLEFGHWSYECKGK 246
           RC +CL   H SYECK K
Sbjct: 357 RCFRCLRKNHRSYECKSK 374


>SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)
          Length = 558

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 184 QGIRCQKCLEFGHWSYECKGKR 249
           +G +C KC + GH++  CKG++
Sbjct: 41  RGKKCAKCFKSGHFAACCKGEK 62


>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 190 IRCQKCLEFGHWSYECKGK--RKI*FVLHVHE 279
           +RC KC + GH++  C+ K   ++  V+  HE
Sbjct: 233 VRCDKCTKVGHFAAVCRSKPNTRVSQVVDAHE 264


>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 190 IRCQKCLEFGHWSYECKGK 246
           +RC KC + GH++  C+ K
Sbjct: 185 VRCDKCTKVGHFAVVCRSK 203


>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
          Length = 1198

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 190 IRCQKCLEFGHWSYECKGK 246
           +RC KC + GH++  C+ K
Sbjct: 21  VRCDKCTKVGHFAAVCRSK 39


>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
          Length = 1191

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 190 IRCQKCLEFGHWSYECKGK 246
           +RC KC + GH++  C+ K
Sbjct: 235 VRCDKCTKVGHFAAVCRSK 253


>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
          Length = 1366

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 196 CQKCLEFGHWSYECKGKR 249
           C KC + GHW+  C+G +
Sbjct: 447 CFKCGQEGHWAKNCRGSK 464


>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2749

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -3

Query: 235  THSSSVQTPSTSGILCLEEKQQPELLAFSSQPDACYMFPESYSESQRE 92
            T++S +   S   + C    ++P +L   ++ +  + + ES+ E Q+E
Sbjct: 2152 TNTSPLSDQSVGSVQCDSPIEEPIILPSEAKSEESHFYDESFFEDQKE 2199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,162
Number of Sequences: 59808
Number of extensions: 234159
Number of successful extensions: 1039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)