Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0231.Seq
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    32   0.24 
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    32   0.24 
AF016424-9|AAB65327.2|  530|Caenorhabditis elegans Udp-glucurono...    27   6.9  

>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 CQKCLEFGHWSYECKGKRK 252
           C++C E GHW YEC  + K
Sbjct: 667 CRRCAEEGHWGYECPTRPK 685


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 CQKCLEFGHWSYECKGKRK 252
           C++C E GHW YEC  + K
Sbjct: 667 CRRCAEEGHWGYECPTRPK 685


>AF016424-9|AAB65327.2|  530|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein61 protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +3

Query: 177 FSSRHKMPEVLGVWTLEL*VQGQTQDLVRPSRTRIMHKNLKAKEEGQ 317
           F S  K+P+ +  + L+  V+G T+  +   ++ +++KN+  K+  Q
Sbjct: 59  FESNVKVPKGVKTYQLDAAVEGITKQSIEKEQSAMLYKNMGLKDMPQ 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,187,040
Number of Sequences: 27780
Number of extensions: 176970
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)