Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0231.Seq
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    39   0.002
At5g66630.1 68418.m08398 LIM domain-containing protein contains ...    29   2.8  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    28   3.7  
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    27   6.4  
At5g66620.1 68418.m08397 LIM domain-containing protein contains ...    27   8.5  

>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 193 RCQKCLEFGHWSYECKGKR 249
           +CQKC + GHW+YECK +R
Sbjct: 99  QCQKCFQAGHWTYECKNER 117


>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
           similarity to Pfam profile PF00412: LIM domain
          Length = 702

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 120 QSHIQNLKGKINKIRG*LNICLELYCSNCNRSSIKIYRI 4
           ++H+ N +GK +K       C E YC  C    +K Y I
Sbjct: 387 ENHVSNSRGKFHKS------CYERYCYVCKEKKMKTYNI 419


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 196 CQKCLEFGHWSYECKGK 246
           C KC + GHWS +C G+
Sbjct: 306 CYKCGKQGHWSRDCTGQ 322


>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 136 HQAERKKQXXXXXXFPQGIRCQKCLEFGHWSYEC 237
           H A  +++      F QG  C  C   GH++ +C
Sbjct: 37  HDAPSRREREPRRAFSQGNLCNNCKRPGHFARDC 70


>At5g66620.1 68418.m08397 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 644

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 120 QSHIQNLKGKINKIRG*LNICLELYCSNCNRSSIKIY 10
           ++H+ N +GK +K       C E YC  C    +K Y
Sbjct: 326 ENHVSNSRGKFHKS------CYERYCYVCKEKKMKTY 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,522,661
Number of Sequences: 28952
Number of extensions: 162198
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)